BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2455.p (218 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 102 1e-23 gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 101 4e-23 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 82 3e-17 gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 74 8e-15 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 102 bits (255), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 121/218 (55%), Gaps = 4/218 (1%) Query: 1 MLLQNVLDFLPILLQGALVTVEVTILSFLLSSLLGLLLALMKVSRIKAVALAGATIVNII 60 M+ ++ D L LL TV +++++FLL +LGLL+ + S+ A+ + I Sbjct: 1 MISFSLWDILRNLLLAGRWTVVLSLVTFLLGGMLGLLILFFRTSKSGALRNVARIYIEIF 60 Query: 61 RGLPIIVQLFYIYFVLPDIGIQFSAFHAGVIGLGIAYSAYQAENFRAGIEAVDVGQIEAA 120 +G P+++QLF ++F + GI+ A+ A + L + +++ AE +R +EA+ GQ EA+ Sbjct: 61 QGTPLLMQLFLVFFGIALFGIEVPAWLAAGLTLTLWSASFLAEIWRGCVEAIPRGQWEAS 120 Query: 121 QSIGMRGPLIMRRVILPQAFRIALPPYGNTLVMMLKDSSLVSTITVLEMTRAGQMIASST 180 + M MR VILPQA RIALPP V ++K +++ S I +E+++A +I ++T Sbjct: 121 SVLAMNYVQQMRYVILPQALRIALPPTIGFSVQIIKGTAVTSIIGFVELSKAATVITNAT 180 Query: 181 FQNMTVYTTVAVLYLLLSLPLV----FLIRRLEIRNSK 214 F TVY + Y +L PL FL R+ +S Sbjct: 181 FMPFTVYAAAGLFYFILCWPLSRYSQFLERKFHAAHSH 218 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 101 bits (251), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 120/220 (54%), Gaps = 15/220 (6%) Query: 7 LDF------LPILLQGALVTVEVTILSFLLSSLLGLLLALMKVSRIKAVALAGATIVNII 60 LDF P LL G T+++T+++ + G LLA+ ++S K ++L A VN++ Sbjct: 4 LDFEIITRTWPYLLAGLQYTLQLTVVAAFGGVIFGTLLAMARLSSNKTLSLIAAAYVNLM 63 Query: 61 RGLPIIVQLFYIYFVLP---------DIGIQFSAFHAGVIGLGIAYSAYQAENFRAGIEA 111 R +P+++ +F+ YF++P + +Q A + I + +AY E RAGI++ Sbjct: 64 RSIPLLLVIFWFYFLMPIVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQS 123 Query: 112 VDVGQIEAAQSIGMRGPLIMRRVILPQAFRIALPPYGNTLVMMLKDSSLVSTITVLEMTR 171 + GQ+ A ++G+ M+ V+LPQAFR LP +++ +D SLVS + V + Sbjct: 124 ISKGQVNAGYALGLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVG 183 Query: 172 AGQMIASSTFQNMTVYTTVAVLYLLLSLPLVFLIRRLEIR 211 A +A + + +Y VA++Y +LS L L+++L+ R Sbjct: 184 AAVKVAQRDSRVVEMYLFVAIVYFVLSFALSTLVKQLQKR 223 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 81.6 bits (200), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 111/214 (51%), Gaps = 15/214 (7%) Query: 1 MLLQNVLD----FLPILLQGALVTVEVTILSFLLSSLLGLLLALMKVSRIKAVALAGATI 56 + L+ V D +L LL G T+ V + +++ + ++G ++ + + S + + G Sbjct: 5 IFLEQVPDGDGTWLESLLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVRLGGAY 64 Query: 57 VNIIRGLPIIVQLFYIYFVLPDIGIQFSA-----------FHAGVIGLGIAYSAYQAENF 105 V + R +P++VQ F YFV+P + A F V+ LG S+ AE Sbjct: 65 VELFRNIPLLVQFFVWYFVVPGLVPAVKAWVITLDPTEHQFVTAVVCLGFFTSSRIAEQV 124 Query: 106 RAGIEAVDVGQIEAAQSIGMRGPLIMRRVILPQAFRIALPPYGNTLVMMLKDSSLVSTIT 165 R+GI+A+ GQ A ++G+ R V+LP A+RI +PP + L+ ++K++++ +I Sbjct: 125 RSGIQALPRGQRNAGYALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIG 184 Query: 166 VLEMTRAGQMIASSTFQNMTVYTTVAVLYLLLSL 199 ++E+ + + TF+ + ++Y+++++ Sbjct: 185 LVELFFRTREMGEMTFRYFEAFGAATLIYVVIAM 218 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 73.9 bits (180), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 96/183 (52%) Query: 5 NVLDFLPILLQGALVTVEVTILSFLLSSLLGLLLALMKVSRIKAVALAGATIVNIIRGLP 64 + D+ +L++G L TVE+ + +L +G+ A + + + + V +IR P Sbjct: 9 STFDYSGVLVKGVLTTVELIAVGGVLGVAVGIFGAWARTQEPRWLRPVVSAYVELIRNTP 68 Query: 65 IIVQLFYIYFVLPDIGIQFSAFHAGVIGLGIAYSAYQAENFRAGIEAVDVGQIEAAQSIG 124 ++QLF+I+F LP IG+Q + A ++ + I AY E RAG+ AV GQIEAA S+ Sbjct: 69 FLIQLFFIFFGLPSIGVQITEMQAAILAMVINLGAYSTEIIRAGVVAVARGQIEAALSLS 128 Query: 125 MRGPLIMRRVILPQAFRIALPPYGNTLVMMLKDSSLVSTITVLEMTRAGQMIASSTFQNM 184 M I R +IL A + P + +V+++ S++ S I V E++ A I F+ Sbjct: 129 MTRVQIFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFIQGRNFRAF 188 Query: 185 TVY 187 Y Sbjct: 189 EAY 191 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.330 0.143 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 370,899 Number of extensions: 13474 Number of successful extensions: 70 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 69 Number of HSP's successfully gapped: 4 Length of query: 218 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 138 Effective length of database: 925,261 Effective search space: 127686018 Effective search space used: 127686018 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 127 (53.5 bits)