BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2454.p (242 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 253 8e-69 gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 251 4e-68 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 166 1e-42 gi|152981146|ref|YP_001354830.1| cell division ATP-binding prote... 151 3e-38 gi|152980377|ref|YP_001353978.1| ABC-type phosphate transport sy... 143 1e-35 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 253 bits (646), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 123/236 (52%), Positives = 165/236 (69%) Query: 1 MIEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 +I + + K +G ++VLK + + V GEV+ +IG SGSGKST+LRCINGLES + G I + Sbjct: 3 LIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISV 62 Query: 61 DGQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARGQAMAL 120 G + + ++ LR +VGM+FQ+FNLFPH +V N+ P+ V V + AR AM Sbjct: 63 AGSHLGKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARALAMKN 122 Query: 121 LEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 LEKVGL+ + D++P QLSGGQQQRVAIAR+L+M+P+A+L DE TSALDPELV EVL V+R Sbjct: 123 LEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLNVVR 182 Query: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDFL 236 LA +GMT+I+VTHEM FAREV DRV F+H G + E G + + P + FL Sbjct: 183 GLAHEGMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELKQFL 238 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 251 bits (640), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 122/240 (50%), Positives = 168/240 (70%) Query: 1 MIEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 MIE+ ++SK +G +VL D + VA+G+VV + GPSGSGKST+++ +NGLE +++G I + Sbjct: 1 MIELDKVSKWYGNFQVLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQQGKITV 60 Query: 61 DGQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARGQAMAL 120 DG V ++ LR+R+GMVFQ F LFPH ++ EN+T V V + A + + Sbjct: 61 DGISVGDPKTNLSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSLPDATERGLKY 120 Query: 121 LEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 L++VGL A D +P QLSGGQQQRVAIAR+L+M P A+LFDEPTSALDPE++ EVL VM Sbjct: 121 LDRVGLIAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDFLRRVI 240 LA +GMTM+VVTHEMGFA++VA+RV F+ G IVE + + R +DFL ++I Sbjct: 181 GLAQEGMTMMVVTHEMGFAKKVANRVIFMDKGLIVEDCTKDEFFGTTRSDRARDFLAKII 240 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 166 bits (420), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 100/243 (41%), Positives = 137/243 (56%), Gaps = 10/243 (4%) Query: 2 IEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILID 61 IEVK I K FG L +VSL GE+ L+GPSG GK+T+LR I GLE + G +L+D Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 62 GQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEG----PVFVNRVPREQARGQA 117 G+ D++ H +VG VFQ + LF H TV EN+ G P R Q + + Sbjct: 63 GE----DASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPA-ATRPSESQIKEKV 117 Query: 118 MALLEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLA 177 LLE V L D YP QLSGGQ+QR+A+AR+LA++P +L DEP ALD ++ E+ Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 178 VMRTLAAD-GMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDFL 236 +R L D +T I VTH+ A EVAD++ ++ G++ + G V + P FL Sbjct: 178 WLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFL 237 Query: 237 RRV 239 V Sbjct: 238 GNV 240 >gi|152981146|ref|YP_001354830.1| cell division ATP-binding protein FtsE [Janthinobacterium sp. Marseille] Length = 227 Score = 151 bits (382), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 133/219 (60%), Gaps = 4/219 (1%) Query: 1 MIEVKRISKCFGQH-EVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDIL 59 MIE ++SK + Q+ L D+SLSV +GE+V L GPSG+GKST+L+ I +E G ++ Sbjct: 1 MIEFHQVSKKYTQNVTALSDISLSVGKGELVFLAGPSGAGKSTLLKLIAAMERPSEGSVI 60 Query: 60 IDGQRVDR-DSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARGQAM 118 + G + R ++ + LR +G++FQ+ L R+VL NV P+ V R A +A Sbjct: 61 VSGHDISRIKTSGLPYLRRNLGLIFQQQRLLADRSVLANVML-PLIVCGASRPDAERRAR 119 Query: 119 ALLEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAV 178 A L+KVGL + P LSGG+QQRVAIAR++ +P+ IL DEPT+ LD +VL Sbjct: 120 AALDKVGLLDMASSGPLTLSGGEQQRVAIARAIVNRPQIILADEPTANLDRAAANKVLDA 179 Query: 179 MRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVES 217 ++ + G+T ++ TH+ F + A RV +L G I+ES Sbjct: 180 LKAFHSVGVTCLISTHDEQFL-DTATRVIYLDHGRIIES 217 >gi|152980377|ref|YP_001353978.1| ABC-type phosphate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 260 Score = 143 bits (360), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 129/244 (52%), Gaps = 11/244 (4%) Query: 2 IEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYE-----RG 56 +E+ ++ +G + LK+++L + + +V IGPSG GKST+LR N + G Sbjct: 14 LEIANLNFFYGSFQGLKNINLDIHDKKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAEG 73 Query: 57 DILIDGQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARGQ 116 I+ G+ + D++ LR +VGMVFQ+ FP +V +N+ G +P+ + + Sbjct: 74 KIMYHGKNILEPGQDVNMLRAKVGMVFQKPTPFP-MSVYDNIAFGVRLYENLPKGEMDER 132 Query: 117 AMALLEKVGLAA----RCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELV 172 L K L + LSGGQQQR+ IAR +A++P+ +L DEPTSALDP Sbjct: 133 VEWALNKAALWTEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPDVLLLDEPTSALDPIST 192 Query: 173 GEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHART 232 ++ ++ L D T+ +VTH M A +D +++ G +VE G Q+ P T Sbjct: 193 AKIEELISELKGD-YTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPNKKDT 251 Query: 233 QDFL 236 QD++ Sbjct: 252 QDYI 255 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 523,238 Number of extensions: 20267 Number of successful extensions: 312 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 191 Number of HSP's successfully gapped: 67 Length of query: 242 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 161 Effective length of database: 921,564 Effective search space: 148371804 Effective search space used: 148371804 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)