BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2452.p
         (469 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979867|ref|YP_001352067.1| NAD(P) transhydrogenase subunit...   686   0.0  

>gi|152979867|ref|YP_001352067.1| NAD(P) transhydrogenase subunit
           beta [Janthinobacterium sp. Marseille]
          Length = 468

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/466 (74%), Positives = 397/466 (85%)

Query: 3   ASSLVTTSYIGAIVLFILSLGGLSNPETARRGNVYGIIGMAVAILATIFGPHVTMSGLPY 62
           +++L T SYIGA +LFILSLGGLS+PET+RRGN+YG+IGM +A+LATIFGP VT  G  +
Sbjct: 2   SANLATVSYIGATILFILSLGGLSHPETSRRGNLYGMIGMGIAVLATIFGPRVTADGYAW 61

Query: 63  LICAILVGGSIGLIAARRIKMTQMPELVALMHSLVGLAASLIGFVSYFSHAESAAGASSA 122
           +I A+LVGG IGL AA+++KMT+MPELVALMHS VGLAA+L+GF SY   +    GA  A
Sbjct: 62  IILALLVGGVIGLYAAKKVKMTEMPELVALMHSFVGLAAALVGFASYIDPSIHLEGAEKA 121

Query: 123 ILKVEIYIGVLIGAVTFSGSLIAFGKLAGKIGGKPLMLPARHWLNLACLLLMIWLAVDFV 182
           I +VEIY+G+ IGAVTFSGSLIAFGKL GKIGGKPL+LPARH++NL  LLL+IW   +FV
Sbjct: 122 IHQVEIYVGIFIGAVTFSGSLIAFGKLNGKIGGKPLLLPARHFINLIGLLLVIWFGREFV 181

Query: 183 GADSTAQGLLPLLIMTGLALLFGIHMVMAIGGADMPVVVSMLNSYSGWAATATGFILSND 242
            A   A G+ PL+IMT +ALLFG+HMVMAIGGADMPVVVSMLNSYSGWAA+ATGF+L ND
Sbjct: 182 NAPDVASGMTPLIIMTVIALLFGVHMVMAIGGADMPVVVSMLNSYSGWAASATGFMLGND 241

Query: 243 LLIVTGALVGSSGAILSSIMCKAMNRNFLSVIAGGFGTGAAKVQGEHAAIAGEVTAISAQ 302
           LLIVTGALVGSSGAILS IMC+AMNRNF SVIAGGFG GA K  G      GE T +SAQ
Sbjct: 242 LLIVTGALVGSSGAILSYIMCQAMNRNFFSVIAGGFGGGAPKAGGAVKEQVGEATPVSAQ 301

Query: 303 DTAGLLKQAKSVIIVPGYGMAVAQAQHTVWEITAFLRERGVNVRFGIHPVAGRMPGHMNV 362
           +TA LL++AKSV+IVPGYGMAVAQAQHTV EIT  LR +G  VRF IHPVAGRMPGHMNV
Sbjct: 302 ETAELLREAKSVVIVPGYGMAVAQAQHTVNEITKLLRAKGTKVRFAIHPVAGRMPGHMNV 361

Query: 363 LLAEAKVPYDIVMEMDEINHDFPDTDVAVVIGANDIVNPAAEDDPTSPIAGMPVLQVWKA 422
           LLAEAKVPYDIV+EMDEIN DFPDTDV +VIGANDIVNP A++DP SPIAGMPVL+VWKA
Sbjct: 362 LLAEAKVPYDIVLEMDEINEDFPDTDVVMVIGANDIVNPDAQEDPDSPIAGMPVLEVWKA 421

Query: 423 KCAIVMKRSMASGYAGVDNPLFYRDNTRMLFGDAKKMLDEVLLALK 468
           + +IVMKRSMASGYAGVDNPLFY++N RMLFGDAKKMLDEVL  LK
Sbjct: 422 ETSIVMKRSMASGYAGVDNPLFYKENNRMLFGDAKKMLDEVLATLK 467


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,129,092
Number of extensions: 50265
Number of successful extensions: 221
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 382
Effective length of database: 899,382
Effective search space: 343563924
Effective search space used: 343563924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)