BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2444.p
         (254 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981351|ref|YP_001352423.1| IclR family transcriptional reg...    76   2e-15
gi|152981479|ref|YP_001355355.1| IclR family transcriptional reg...    68   5e-13

>gi|152981351|ref|YP_001352423.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 258

 Score = 76.3 bits (186), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 7/224 (3%)

Query: 28  ELAKRSGNTKARAFRLLTTLEECGLVRRQLPMATYSLGYRALILGTAAQGQLSLVNVARD 87
           EL+  +G   + A R+L  L     V R  P  TY LG R L LG   + +L +   A D
Sbjct: 36  ELSSVTGLHPSTAHRILNDLVIKRFVDRSEP-GTYRLGMRLLELGNIVKSRLDVREAALD 94

Query: 88  ILEDIGNECNESVLVRVRDGMDTVCVAW-WDAPHAIRVHSQLGDRRPLSAGASGKLLLAY 146
           ++  +  + N++V + VR   + + +   +     ++V   +G R PL   ++GKL L+ 
Sbjct: 95  LMRHLHRKTNQTVNLSVRQNDEIIYIDRAFSERSGMQVVRAVGGRAPLHLTSTGKLFLSI 154

Query: 147 -APADVQAEILSGKLEKFTPNTIVKQTDLKKELKKILAEGFSISHSEKTADMVAVAAPVR 205
             P  VQA      L     N+I     L+ EL ++   G++  + E    +  +AA + 
Sbjct: 155 DEPRMVQAYATRTGLAGHNKNSITDLKKLEGELNQVRLHGYARDNEELELGVRCMAAGIH 214

Query: 206 DSQGHVVASLSMTAPSSRVPKEKLDKYVKIITQAAARFSRLLGY 249
           D  G ++A LS++AP+ R+ +E    ++  +   A + S  LGY
Sbjct: 215 DDTGRLIAGLSISAPADRLQEE----WLADLMDTAKQISAALGY 254


>gi|152981479|ref|YP_001355355.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 257

 Score = 68.2 bits (165), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 114/251 (45%), Gaps = 15/251 (5%)

Query: 6   DAVSKAIELLFLVAEE--GGNGVTELAKRSGNTKARAFRLLTTLEECGLVRRQLPMATYS 63
            ++S+AI  +  +A    GG  + +LA+        A R+L  L   G++ +      Y+
Sbjct: 11  QSISRAIRAMKHIARHTPGGMRLVDLAREMELEHPTAHRMLKALVAEGMLVQLSGSKRYT 70

Query: 64  LGYRALILGTAAQGQLSLVNVARDILEDIGNECNESVLVRVRDGMDTVCVAWWDAPHAIR 123
           LG     LG AA  Q +L ++   +LE +     ++  + VR G D +C++     + I+
Sbjct: 71  LGPVMFELGLAATHQFNLRDICAPVLERLAQSTGDTSFLFVRSGNDAICLSRIQGNYPIQ 130

Query: 124 VH-SQLGDRRPLSAGASGKLLLAYAPADVQAEILS------GKLEKFTPNTIVKQTDLKK 176
                +G R+PL   A G  LL+  P     +IL          E    N ++   +   
Sbjct: 131 TPVVPVGSRQPLGVSAGGLALLSCLPKAEAEQILREVEPRLSVYENLDINDVIDHYNRTH 190

Query: 177 ELKKILAEGFSISHSEKTADMVAVAAPVRDSQGHVVASLSMTAPSSRVPKEKLDKYVKII 236
           EL      G++   +     + A+  P+R++ G  VA++++    +R+   ++++ + I+
Sbjct: 191 EL------GYAWISNHAVPGVSALGLPIRNAAGTAVAAITVATTLARMTATRVNEILPIL 244

Query: 237 TQAAARFSRLL 247
            +AA   +RLL
Sbjct: 245 REAAQDVARLL 255


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 513,654
Number of extensions: 18595
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 254
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 173
Effective length of database: 921,564
Effective search space: 159430572
Effective search space used: 159430572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)