BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2442.p (402 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinob... 110 2e-25 gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Ma... 108 8e-25 gi|152981829|ref|YP_001355256.1| porin [Janthinobacterium sp. Ma... 106 3e-24 gi|152981718|ref|YP_001352190.1| porin [Janthinobacterium sp. Ma... 104 8e-24 gi|152981865|ref|YP_001352985.1| porin [Janthinobacterium sp. Ma... 100 1e-22 >gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinobacterium sp. Marseille] Length = 364 Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 129/430 (30%), Positives = 170/430 (39%), Gaps = 94/430 (21%) Query: 1 VKKSAIGLACLG-IVGTAYAQSSVEIYGVATAGLGYVNKVATTGTNTGSRVGIDSGQYTQ 59 +KKS + LA LG G A AQSSV +YG+ G +V+ G GS+ GIDSG + Sbjct: 1 MKKSLLALAVLGAFAGAASAQSSVTVYGIVDLGFAHVDD----GNPAGSKNGIDSGGQSA 56 Query: 60 SRIGFRGAEDLGGGNKAEFVIEGGF---------------TLDNGASAQNGATFGRRTTV 104 SRIGF+G EDLG G KA F +E T N A N F R TV Sbjct: 57 SRIGFKGTEDLGNGLKALFQLEATLQADTGAGFGAAAAPATGFNAGVANNAGGFNRFATV 116 Query: 105 GL-SGDYGDVQLGRRKDYTDFIANQYSTASRMLPF--------TGKAHGNNLDRATGERA 155 GL S +G V LGR+ T I + Y ++ PF N + R Sbjct: 117 GLQSAAFGTVLLGRQ---TSVIKDAY---DQIDPFGDGGTVGAISTVFFNGVLAGDYGRI 170 Query: 156 NNMIYYTTPNYGGFQANLTYAFGEAAGSNSTGQSLGLGANYDNGPFGIGLAYWQSKKAAT 215 +N Y + ++GGF+ Y FGE G + GLG Y NGP + AY + Sbjct: 171 SNSAKYQSNSFGGFKFGAAYGFGETPGDTGANSNYGLGLGYANGPLNVQFAYHNQDR--- 227 Query: 216 VGSVSTNTSSDQGAASNAGCNTATLGNAGDTCTKVWMLGTNYDIGPVTLRGTYSLVKQPL 275 S N S Q K+ +LG YD G V L G Y K L Sbjct: 228 --STVANPSVQQAEG------------------KLMLLGATYDFGVVKLHGAYGDTK--L 265 Query: 276 VNASSGTAA---NFVRTVTATSGTAAFTAGGINNSRADIYDVGADYKMGNWLFKGSVIYS 332 N+ + T N++ V+A G A N + + AD K Sbjct: 266 ENSVANTEVKYRNYMLGVSAPVGPGTIFASYTANDNRSVDN--ADAK------------- 310 Query: 333 RYDFVGASNKGKLTTFVLGADYSLSKRSLLYAMLANMRASDMYSPGLTSNGAPGADKSQN 392 F + Y LSKR+ LY + D GL + GAP +S + Sbjct: 311 --------------KFAISYSYDLSKRTNLYTGYSKTSNDDGSRIGLNA-GAP-VGESAS 354 Query: 393 ALALGILHRF 402 +GI H+F Sbjct: 355 IFNVGIRHKF 364 >gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Marseille] Length = 327 Score = 108 bits (269), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 15/214 (7%) Query: 1 VKKSAIGLACLG-IVGTAYAQSSVEIYGVATAGLGYVNKVATTGTNTGSRVGIDSGQYTQ 59 +KK+ + L + G Y QSSV +YGV GL K+ G G+ GIDSG + Sbjct: 1 MKKTLFAFSMLASMAGATYGQSSVTVYGVVDLGL----KIENAGN--GTVTGIDSGNQSV 54 Query: 60 SRIGFRGAEDLGGGNKAEFVIEGGFTLDNGASAQNGATFGRRTTVGLSGDYGDVQLGRRK 119 SR+GF+G EDLG G KA FV+E GF D+G+ + F R++ V L+G +G+V+LGR + Sbjct: 55 SRVGFKGTEDLGNGLKANFVLEAGFNADSGSQSDATRFFNRQSYVSLAGGFGEVKLGRVQ 114 Query: 120 DYTDFIANQYSTASRMLPFTGKAHGNNLDRAT--GERANNMIYYTTPNYGGFQANLTYAF 177 ++ ++ PF G+++ G R +N + Y+ G Y+F Sbjct: 115 TMV------FTNSAVFDPFADTLAGDSVRIFNYGGNRIDNTVNYSFAAKNGINGQAAYSF 168 Query: 178 GEAAGSNSTGQSLGLGANYDNGPFGIGLAYWQSK 211 GE AG+ S +++ Y +GP L Y +K Sbjct: 169 GEVAGNTSASRTVAGAIGYASGPLATVLTYQDTK 202 >gi|152981829|ref|YP_001355256.1| porin [Janthinobacterium sp. Marseille] Length = 363 Score = 106 bits (264), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 114/395 (28%), Positives = 169/395 (42%), Gaps = 66/395 (16%) Query: 19 AQSSVEIYGVATAGLGYVNKVATTGTNTGSRVGIDSGQYTQSRIGFRGAEDLGGGNKAEF 78 AQSSV + G+A G++ + +G + +DSG + S IGF+G EDLGGG KA F Sbjct: 24 AQSSVTMEGIAD---GFMGSMRNSG-DAARTSKVDSGGLSTSYIGFKGFEDLGGGLKASF 79 Query: 79 VIEGGFTLDNGASAQNGAT--FGRRTTVGLSGDYGDVQLGRRKDYTD---FIANQYSTAS 133 + + +D+GA + G F R V LSG +G + LGR T ++ N + Sbjct: 80 TLGAFYRIDDGAYGRFGGDTFFARDANVALSGSFGKLMLGRMTPPTTLPLYMFNPVEDSF 139 Query: 134 RMLPFT-GKAHGNNLDRATGERAN----NMIYYTTPNYGGFQANLTYAFGEAAGSNSTGQ 188 + P G N+ T R + N I YT+P + G NL Y FGEAAG NS+ Sbjct: 140 SLSPLVLHTIVGTNVFPGTFGRTDSAWSNSIAYTSPTFAGLTFNLHYQFGEAAG-NSSKN 198 Query: 189 SLGLGANYDNGPFGIGLAYWQSKKAATVGSVSTNTSSDQGAASNAGCNTATLGNAGDTCT 248 + G A Y NGP +GLAY + VG+ N G + N T Sbjct: 199 NKGANALYQNGPLALGLAYHDVQ----VGNPVDNPIVPNGPSVMLSVPVPGGPNLVATRQ 254 Query: 249 KVWMLGTNYDIGPVTLRGTYSLVKQPL-VNASSGTAANFVRTVTATSGTAAFTAGGINNS 307 K+ +G +YD + TY + + +GT Sbjct: 255 KLAFVGGSYDFSYLKFFATYDRATHDVDLKDQTGT------------------------- 289 Query: 308 RADIYDVGADYKMGNWLFKGSVIYSRYDFVGASNKGKLTTFVLGADYSLSKRSLLYAMLA 367 +G +GN G+V ++ + S+ K TT +G DY LSKR+ LY+ L Sbjct: 290 ------LGLSVPLGNGKLLGAVAQTKRESALFSDV-KRTTVSVGYDYFLSKRTDLYSFLM 342 Query: 368 NMRASDMYSPGLTSNGAPGADKSQNALALGILHRF 402 N + +D + ++A+G+ HRF Sbjct: 343 NDKTTDY--------------ANAVSVAVGMRHRF 363 >gi|152981718|ref|YP_001352190.1| porin [Janthinobacterium sp. Marseille] Length = 364 Score = 104 bits (260), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 120/414 (28%), Positives = 169/414 (40%), Gaps = 79/414 (19%) Query: 4 SAIGLACLGIVGTAYAQSSVEIYGVATAGLGYVNKVATTGTNTGSRVGIDSGQYTQSRIG 63 +A+G AC A AQ+SV++ G+ ++ V +G S V ++SG T S G Sbjct: 15 AALGAAC---ALPAMAQTSVQVTGLVD---NFIGSVKYSGDAGRSSV-VNSGGMTTSWFG 67 Query: 64 FRGAEDLGGGNKAEFVIEGGFTLDNGASAQ---NGATFGRRTTVGLSGDYGDVQLGR--- 117 F+G EDLGGG KA+F + F D G + + N F R VGL G +G++ LGR Sbjct: 68 FKGTEDLGGGLKAKFNLTSFFRADTGGAGRFDGNETFFSRDANVGLIGKFGEISLGRDLA 127 Query: 118 RKDYTDFIANQYSTASRMLP---------FTGKAHGNNLDRATGERANNMIYYTTPNYGG 168 + N + + ++ P F G N++ TG +N I YTTPN G Sbjct: 128 PHFLPSILFNPFGDSFQLSPLMLHADVPLFNGSRWSNSVAADTGW--SNEIIYTTPNMAG 185 Query: 169 FQANLTYAFGEAAGSNSTGQSLGLGANYDNGPFGIGLAYWQSKKAATVGSVSTNTSSDQG 228 +AN+ Y FGE AG S ++G+ Y NGP G+ AY+Q + N +Q Sbjct: 186 LKANIHYQFGEVAGQ-SGKNNVGMNLLYSNGPLGLA-AYYQ--------KIRVNNPLEQ- 234 Query: 229 AASNAGCNTATLGNAGDTCTKVWMLGTNYDIGPVTLRGTYSLVKQPLVNASSGTAANFVR 288 N LG W +G +YD L TY N +S R Sbjct: 235 TPGNVLPAATLLGGLTPARQTGWFVGGSYDFAVAKLFATY--------NQTSHDVDLQDR 286 Query: 289 TVTATSGTAAFTAGGINNSRADIYDVGADYKMGNWLFKGSVIYSRYDFVGASNKGKLTTF 348 TV +G +G S ++ D K T Sbjct: 287 TV----------------------QLGTSIPLGQGAILASWANTKRDGAAIGQDLKRNTA 324 Query: 349 VLGADYSLSKRSLLYAMLANMRASDMYSPGLTSNGAPGADKSQNALALGILHRF 402 G DY++SKR+ LYA+ MY N + N +ALGI HRF Sbjct: 325 SFGYDYNISKRTDLYAVY-------MYDKITQQN-------TGNTVALGIRHRF 364 >gi|152981865|ref|YP_001352985.1| porin [Janthinobacterium sp. Marseille] Length = 413 Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 119/439 (27%), Positives = 179/439 (40%), Gaps = 78/439 (17%) Query: 5 AIGLACLGIVGTAYAQSSVEIYGV------------ATAGLGYVNKVATTGTNTGSRVGI 52 AI AC G+ + A+ SV +YG TA V+ + + T T + Sbjct: 12 AISAAC-GLPFSVQAEPSVTVYGKLYPQITNYSLSRGTAAGTSVSTLVSPVTATPQSLSG 70 Query: 53 DSGQYTQSRIGFRGAEDLGGGNKAEFVIEGGFTLDNGASAQNGATFGRRTTVGLSGDYGD 112 + + S IGFRG+E +G G A F +E +D GA + F R T VGL G G+ Sbjct: 71 TVVESSNSYIGFRGSEKIGDGLTAMFQLEASIGIDTGAQSSPDIFFSRETFVGLEGGLGE 130 Query: 113 VQLGRRKDYTDFIANQYSTASRMLPFTGKAHGN-----NLDRATG----------ERANN 157 +++G+ + Y + L F G + GN N+ G ER N Sbjct: 131 IKMGK-------LDTVYKSLGDTLSFGGVSSGNFVSGSNIMSKNGFGTNSAHRFHERPAN 183 Query: 158 MIYYTTPNYGGFQANLTYAFGEAAGSNSTGQSLGLGANYDNGPFGIGLAYWQSKK----A 213 + YTTP GFQ L Y+FGE S G + G Y GP+ + LA Q + + Sbjct: 184 TVMYTTPEVSGFQGLLGYSFGEIPDDRSRGNIISAGITYKAGPWYVALANEQHENFYGAS 243 Query: 214 ATVGSVSTNTSSDQGAASNAGCNTATLGNAGDTCTKVWMLGTNYDIGPVTLRGTYSLVKQ 273 + + N + G AG ++ DT T+ Q Sbjct: 244 RNLPAALRNITGGTG----AGFIRVPGTSSKDTATRA--------------------TAQ 279 Query: 274 PLVNASSGTAANFVRTVTATSGTAAFTAGGINNSRADIYDVGADYKMGNWLFKGS---VI 330 +++ N VR A SG A G + + + + A++KM W GS Sbjct: 280 YQFTSNTRAELNLVRMKLAESGGA---VGRFKSYTHNAWLLTAEHKMNAWAVVGSYGQAS 336 Query: 331 YSRYDFVGASNKG----KLTTFVLGADYSLSKRSLLYAMLANMRASDMYSPGLTSNG--- 383 + VGA N + +G Y+LSKR+ LY++ + MR + +S ++ G Sbjct: 337 AGECELVGAGNCNTDGLNASMLSMGVFYTLSKRTQLYSLFSRMR--NGHSANYSNAGDAQ 394 Query: 384 APGADKSQNALALGILHRF 402 PG ++ LALGI HRF Sbjct: 395 PPGVGQNLTQLALGISHRF 413 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.131 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 969,093 Number of extensions: 43667 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 9 Length of query: 402 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 317 Effective length of database: 906,776 Effective search space: 287447992 Effective search space used: 287447992 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)