BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2441.p
         (251 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981479|ref|YP_001355355.1| IclR family transcriptional reg...    74   9e-15
gi|152981351|ref|YP_001352423.1| IclR family transcriptional reg...    74   1e-14
gi|152980799|ref|YP_001354172.1| IclR family transcriptional reg...    67   8e-13

>gi|152981479|ref|YP_001355355.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 257

 Score = 73.9 bits (180), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 110/227 (48%), Gaps = 9/227 (3%)

Query: 24  GLGVTELSLRSGMTKARAFRMLYTLEKNGLVCRDNQAPIYGLGYNALYLGVAAEGQISLA 83
           G+ + +L+    +    A RML  L   G++ + + +  Y LG     LG+AA  Q +L 
Sbjct: 30  GMRLVDLAREMELEHPTAHRMLKALVAEGMLVQLSGSKRYTLGPVMFELGLAATHQFNLR 89

Query: 84  RLGKKYLRQIGIACNESVQMRIRDGLESVCIARWESFEPIRVQTQP-GSRRPLYVGASGK 142
            +    L ++  +  ++  + +R G +++C++R +   PI+    P GSR+PL V A G 
Sbjct: 90  DICAPVLERLAQSTGDTSFLFVRSGNDAICLSRIQGNYPIQTPVVPVGSRQPLGVSAGGL 149

Query: 143 VLLAYAPREIQDHVLRTERKRFTSATLVNRSSLKQAIAKVLKTGHAVSYGEMSADSV--- 199
            LL+  P+   + +LR    R    ++     +   I    +T H + Y  +S  +V   
Sbjct: 150 ALLSCLPKAEAEQILREVEPRL---SVYENLDINDVIDHYNRT-HELGYAWISNHAVPGV 205

Query: 200 -AIAAPVFNAKAEVMAALSVAGPASRIRDEDVAATAGMLREAARQLS 245
            A+  P+ NA    +AA++VA   +R+    V     +LREAA+ ++
Sbjct: 206 SALGLPIRNAAGTAVAAITVATTLARMTATRVNEILPILREAAQDVA 252


>gi|152981351|ref|YP_001352423.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 258

 Score = 73.6 bits (179), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 122/253 (48%), Gaps = 9/253 (3%)

Query: 2   TDYT-IDAVEETLGLLLLVAQCPG-LGVTELSLRSGMTKARAFRMLYTLEKNGLVCRDNQ 59
           TD T I  +E  + LL  +A  P  + + ELS  +G+  + A R+L  L     V R ++
Sbjct: 7   TDKTSIQVIERMVALLDALALYPDPVSLKELSSVTGLHPSTAHRILNDLVIKRFVDR-SE 65

Query: 60  APIYGLGYNALYLGVAAEGQISLARLGKKYLRQIGIACNESVQMRIRDGLESVCIAR-WE 118
              Y LG   L LG   + ++ +       +R +    N++V + +R   E + I R + 
Sbjct: 66  PGTYRLGMRLLELGNIVKSRLDVREAALDLMRHLHRKTNQTVNLSVRQNDEIIYIDRAFS 125

Query: 119 SFEPIRVQTQPGSRRPLYVGASGKVLLAY-APREIQDHVLRTERKRFTSATLVNRSSLKQ 177
               ++V    G R PL++ ++GK+ L+   PR +Q +  RT        ++ +   L+ 
Sbjct: 126 ERSGMQVVRAVGGRAPLHLTSTGKLFLSIDEPRMVQAYATRTGLAGHNKNSITDLKKLEG 185

Query: 178 AIAKVLKTGHAVSYGEMSADSVAIAAPVFNAKAEVMAALSVAGPASRIRDEDVAATAGML 237
            + +V   G+A    E+      +AA + +    ++A LS++ PA R+++E +A     L
Sbjct: 186 ELNQVRLHGYARDNEELELGVRCMAAGIHDDTGRLIAGLSISAPADRLQEEWLAD----L 241

Query: 238 REAARQLSMNLGY 250
            + A+Q+S  LGY
Sbjct: 242 MDTAKQISAALGY 254


>gi|152980799|ref|YP_001354172.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 352

 Score = 67.4 bits (163), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 11/236 (4%)

Query: 25  LGVTELSLRSGMTKARAFRMLYTLEKNGLVCRDNQAPIYGLGYNALYLGVAAEGQISLAR 84
           L + +++  +GM  A     L + +  G++ ++  +  YGLG  AL LG+AA  Q  +  
Sbjct: 111 LPLRQIAESAGMAVANVHYYLVSFQAVGVIRQEADSGHYGLGPYALKLGMAALEQFDVFT 170

Query: 85  LGKKYLRQIGIACNESVQMRIRDGLESVCIARWE--SFEPIRVQTQPGSRRPLYVGASGK 142
             +  + ++      +V + +        + R E  +  PI ++ + GS  PL   A G+
Sbjct: 171 AARPVMAELAATVGHTVFLGVWGNRGPTIVYRIEGGTSRPI-LELRVGSVLPLLNSALGR 229

Query: 143 VLLAYAPREIQDHVLRTERK-RFTSATLVNRSSLKQAIAKVLKTGHAVSYGEMS------ 195
             LA+ PR I   +L+ E K         + S L Q+ A + K   +V    +S      
Sbjct: 230 NFLAHLPRTITGELLKQELKINLDDKHAPSHSDLPQSAADIEKMLASVKENGLSRCRDAL 289

Query: 196 -ADSVAIAAPVFNAKAEVMAALSVAGPASRIRDEDVAATAGMLREAARQLSMNLGY 250
                +++APVF+   E++AA+++ GP   + D+    TA  L+  A Q+S + G+
Sbjct: 290 LPHFTSLSAPVFDHLGEMIAAITLMGPMGVLDDDLQGVTAKTLKARALQISQDAGF 345


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 522,752
Number of extensions: 19486
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 3
Length of query: 251
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 170
Effective length of database: 921,564
Effective search space: 156665880
Effective search space used: 156665880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)