BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2440.p (525 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982591|ref|YP_001355212.1| ABC-type transport system, peri... 383 e-107 gi|152982644|ref|YP_001353091.1| ABC-type transport system, peri... 116 4e-27 gi|152982754|ref|YP_001351954.1| ABC-type transport system, peri... 100 2e-22 gi|152981157|ref|YP_001352894.1| ABC transporter, periplasmic su... 62 8e-11 >gi|152982591|ref|YP_001355212.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 522 Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust. Identities = 214/515 (41%), Positives = 307/515 (59%), Gaps = 19/515 (3%) Query: 15 VVGLLGTVAQ----AAELKIGFKAEITSADPHVLNSA-NRNIWAHVYDSLVAQDHQLRPK 69 V+ LLG +A AA+LKI A+++S DPH LN A N +H++D+LV D + Sbjct: 11 VLALLGALAMQPLWAADLKIALSADVSSLDPHYLNIAPNVAFSSHIFDALVNVDANGKLV 70 Query: 70 PSLALSWRMINPTTWEFKLRPDVKFHDGQTMTAEDVKYSIERAMNLSG-PRTFRSYLREV 128 P LA SWR ++ TTWEFKLR DVKFHDG TAEDV +S++R L+ P + +Y +++ Sbjct: 71 PGLATSWRAVDATTWEFKLRHDVKFHDGSKFTAEDVVFSLDRPAKLTNSPGPYTAYTKQI 130 Query: 129 SAISVSGPLTVQVKTKHVSPTLPDNLGLIAILPKSLGEHVSEESFANGKSAIGTGPYRFG 188 A + P TV++ T L ++ I I+ K E S E F +GK+ IGTGPY+F Sbjct: 131 IAKKIVDPYTVRLSTATPYGPLALDVSAIFIVSKKAAEKASTEDFNSGKALIGTGPYKFV 190 Query: 189 SWLHGQKLVLNKNSSYWGEKEPWDSVSFQFIPREPARAAALLSGSVDIINDI-TANMERS 247 S+ G ++ + +N YWG K WD VSF+ I R AALLSG VD I + TA++ + Sbjct: 191 SFKRGDRIEVARNEQYWGGKSDWDKVSFRIITNSAPRLAALLSGDVDAIEGVPTADLSK- 249 Query: 248 LRA---FKLVSVTSYMLNYLALDQFRDISPFVRDVTGAPLKKNPMKDLKVRQAMMMAINR 304 L+ FKL S+ + +DQ S +V D G PL KNP++D++VRQA+ AINR Sbjct: 250 LKGNAKFKLEQKISWRTIFWEIDQSERSSRYVTDKAGKPLPKNPLRDIRVRQAISKAINR 309 Query: 305 DGIIKYLMKDDATAAQQLVPKGFFGYDPELKLPGYDAAKARELLAQAGYPQGFQLTLHCP 364 ++ M+ A A +V G GY+ LK+ YD A++LLA+AGYP GF LTLH P Sbjct: 310 QALVDRTMEGLAVPASNIVAPGLLGYNDALKVEAYDPEGAKKLLAEAGYPNGFVLTLHGP 369 Query: 365 NNRYVNDARLCEAVAQQWSQVGIRTDVATMPYSVFQTRAFGSGANGEPEFSAFLVGNGAV 424 N+RY+NDA++ + VAQ +++GI+T V T+P SV+ ++A EFS L+G G + Sbjct: 370 NDRYINDAQVVQTVAQFLNRIGIQTKVETLPLSVYFSKARAG------EFSVALLGWGTL 423 Query: 425 TGDSLTGLVSIIHSYNAATSLGVSNYGRYSNKEVDALIERAAGTTDDAAREDLQRQASRL 484 GD GL +++ + N G N+G+YSN +D LI + G+ D A RE ++A+ + Sbjct: 424 AGD--FGLRTLVGTSNPDIGWGTWNWGKYSNPALDKLIAASLGSVDQAKREGYAKEAAAV 481 Query: 485 ALTDVAIIPLQHLNAFWAMKQSLVLTPRADGFTMA 519 A+ D A++PL H A WAM++ L T R D FT A Sbjct: 482 AMKDYAVVPLHHQYATWAMRKGLKYTARTDEFTFA 516 >gi|152982644|ref|YP_001353091.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 535 Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 128/503 (25%), Positives = 211/503 (41%), Gaps = 77/503 (15%) Query: 55 VYDSLVAQDHQL--RPK---PSLALSWRMINPT---TWEFKLRPDVKFHDGQTMTAEDVK 106 +YD L+A + + RP P LA W+ ++P W F LR VKFHDG A+ V Sbjct: 60 IYDPLIAWEANIGTRPGKLIPGLATEWK-VDPKDQKKWLFTLRKGVKFHDGSDFKADAVV 118 Query: 107 YSIERAMNLSGPR-------TFRSYLREVSAISVSGPLTVQVKTKHVSPTLPDNLGLIAI 159 +++++ +N P+ R + + + V++ TK + P L I Sbjct: 119 WNLDKVLNDKSPQFDAKQSAQVRPRIPSIVSYRKVNDYAVEITTKEIDALFPYQLPWFLI 178 Query: 160 LPKSLGEHVSEESFANGKSAIGTGPYRFGSWLHGQKLVLNKNSSYWGEKE--PWDSVSFQ 217 + E V + A GTGP++ + ++ L KN+ YW + D V Sbjct: 179 SSPAQWEKVGRDWNKFASQASGTGPFKLDKLVPRERAELVKNAGYWDKSRLAQTDRVILL 238 Query: 218 FIPREPARAAALLSGSVDIINDITANMERSLRA--FKLVSVTSYMLNYLALDQFRDISPF 275 IP RA ALL+G VDII ++ L++ FKLV+ +++P Sbjct: 239 PIPDALTRANALLNGQVDIIETPPPDVLPQLKSSGFKLVT---------------NVTPH 283 Query: 276 VRDVTGAPLKKNPMKDLKVRQAMMMAINRDGIIKYLMKDDATAAQQLVPKGFFGYDPELK 335 V + +P D++VR+A +A++R GI+ + A QL P + P K Sbjct: 284 VWPYHFSTQPGSPWTDIRVRKAANLAVDRSGIVALMNGLAVPAYGQLDPTSPWFGKPTFK 343 Query: 336 LP-------------GYDAA---KARELLAQAGYPQGFQLTLHCPNNRYVNDARLCEAVA 379 + GY + KA+ ++AQ G Q L P N Y+ Sbjct: 344 IKYDLAAARALMAQAGYSPSKPLKAKIVIAQGGTGQ----MLSLPMNEYIQ--------- 390 Query: 380 QQWSQVGIRTDVATMPYSVFQTRAFGSGANGEPEFSAFL--VGNGAVTGDSLTGLVSIIH 437 Q +++GI+ + + SGA G+ + + G VT D L Sbjct: 391 QSLAEIGIQVQFEVVELETLYLH-WRSGAKGDINAGKGITAINLGYVTADPFYALTRFAD 449 Query: 438 SYNAATSLGVSNYGRYSNKEVDALIERAAGTTDDAAREDLQRQASRLALTDVAIIPLQH- 496 S A + GV N+G +SN +VDA +++ T D A++ L Q + + D ++ + H Sbjct: 450 SRYVAPN-GV-NWGGWSNPKVDAELDQIRTTFDVKAQDKLLAQVHQAMVDDALMLWVVHD 507 Query: 497 LNAFWAMKQSLVLTPRADGFTMA 519 +N V++P+ GF A Sbjct: 508 VNPH-------VISPKVKGFIQA 523 >gi|152982754|ref|YP_001351954.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 585 Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 145/548 (26%), Positives = 221/548 (40%), Gaps = 106/548 (19%) Query: 7 KVFAAACIVV--GLL----------GTVAQAAELKIGFKAEITSADPHVLNSANRNIWAH 54 KV AA+ +V GLL G L+ A+ T+ D H ++ N Sbjct: 45 KVDAASSAIVRDGLLSYAPEDYYQKGEGKSGGTLRATVAADTTTFDVHSISHGNVQWLGR 104 Query: 55 V-YDSLVAQDHQLRPKPSLALSWRMINP--TTWEFKLRPDVKFHDGQTMTAEDVKYSIER 111 + YD LV QD Q P LA SW I+P T+ F LR DV F DG AE V+ ++E Sbjct: 105 ILYDGLVYQDEQGNISPWLAKSWE-ISPDGKTYTFHLRDDVTFSDGVRFNAEAVQVNLE- 162 Query: 112 AMNLSGPRT--------FRSYLR---------EVSAISVSGPLTVQVKTKHVSPTLPDNL 154 ++ P T R YLR E + P + +S P Sbjct: 163 --HMRDPATKSPLAAAYIRPYLRGRIVDEYTFEATLSEPYSPFLDVLAQSWLSMISPKQ- 219 Query: 155 GLIAILPKSLGEHVSEESFANGKSAIGTGPYRFGSWLHGQKLVLNKNSSY-WG-----EK 208 I PKS+ EH IG+GP+ S++ Q K + Y W K Sbjct: 220 --IRENPKSIAEH-----------PIGSGPFVLESYVRAQGANFVKRADYNWAPPVVRHK 266 Query: 209 EP--WDSVSFQFIPREPARAAALLSGSVDIINDITANMERSLRAFKLVSVTSYMLNYLAL 266 P D + F+P R ++L S D D A +++RA + S Sbjct: 267 GPAYLDRIELTFVPEAMIRYSSLQSAQSDFTLDAPAQNAQAIRADPALRFHS-------- 318 Query: 267 DQFRDISPFVRDVTGAPLKKNPMKDLKVRQAMMMAINRDGII------KYLMKDDATAAQ 320 + R +PF R +T ++K P D+++R+A+ +AI+R+G+ +Y K D AA Sbjct: 319 -RVRKGNPF-RSLT-LNVEKAPFNDVQIRKALALAIDREGVAWITGFGEYEPKSDFLAAN 375 Query: 321 QLVPKGFFGYDPELKLP-GYDAAKARELLAQAGYP----QGFQ---------LTLHCPNN 366 YDP K Y+ A+A L QAG+ +G++ L N Sbjct: 376 SRY------YDPSFKNALTYNVAEANRLFDQAGWTTRDDKGYRTKDGKRLSATVLITENP 429 Query: 367 RYVNDARLCEAVAQQWSQVGIRTDVATMPYSVFQTRAFGSGANGEPEFSAFLVGNGAVTG 426 + N + A+ +VG ++ +P +V R + ++ A +G G Sbjct: 430 AFPNS--VAVAIQADARKVGFELNIELLPLAVITDRRYVG------DYQA--LGGGYWHT 479 Query: 427 DSLTGLVSIIHSYN-AATSLGVSNYGRYSNKEVDALIERAAGTTDDAAREDLQRQASRLA 485 ++ GL + HS + A+ L N R + E+D ++ERA + D + L QA R Sbjct: 480 NTPDGLYILYHSNSIASEKLIGQNSSRLRDAELDDVLERARKSNDPVELKALYSQAQRRL 539 Query: 486 LTDVAIIP 493 V IP Sbjct: 540 TEVVPAIP 547 >gi|152981157|ref|YP_001352894.1| ABC transporter, periplasmic substrate-binding protein [Janthinobacterium sp. Marseille] Length = 606 Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 98/469 (20%), Positives = 183/469 (39%), Gaps = 70/469 (14%) Query: 86 FKLRPDVKFHDGQTMTAEDVKYSIERAMNLSGPRTFRSYLREVSAISVSGPLTVQVKTKH 145 F+L P +F++G + A DVKYS + + S P+ +S L V V TV+ K Sbjct: 126 FRLNPKARFNNGDPVLASDVKYSFDTLVAKSAPQV-KSLLANVKQCVVLNERTVRFDFKA 184 Query: 146 VSPTLPDNLGLIAILPKSLGEHVSEESFANGKSAIGTGPYRFGSWLHGQKLVLNKNSSYW 205 ++ +P +G + + + + I TGPY + G+ + N YW Sbjct: 185 LNREMPLIVGSVPVFSRKWAAGTDFDKI-QLIPPITTGPYLIDRFDTGRSISYKLNPDYW 243 Query: 206 GEKEP-------WDSVSFQFIPREPARAAALLSGSVDIINDITA-NMERSLRAFKLVSVT 257 G P + ++++F + AR A +G D++ + +A N RS + K + T Sbjct: 244 GRDIPTRKGMYNFGRINYRFYKDDVARLEAFKAGEFDLVVENSAKNWARSYKGPKFNNGT 303 Query: 258 SYMLNYLALDQFRDISPFVRDVTGAPLKKNPMKDLKVRQAMMMAINRDGIIKYLM----- 312 + LA + F+ + L++ +D++VRQA+ +A++ + + + L Sbjct: 304 -IIKRELAHSNGAGMQGFLMN-----LRRPQFQDVRVRQALGLALDYEWMNRQLFFGSYK 357 Query: 313 ------------KDDATAAQQLV---------PKGFFG---YDPELKLPGYDAA---KAR 345 +A++LV FG P+ PG A KA Sbjct: 358 RIYSFFNNSPMAATGLPSAEELVLLEPLRKKLDPAVFGQAPIPPDTNPPGSLRANLLKAV 417 Query: 346 ELLAQAGYP---------QGFQLTLHCPNNRYVNDARLCEAVAQQWSQVGIRTDVATMPY 396 EL QAG+ +G +++ +R+ + ++GI+ T Y Sbjct: 418 ELFRQAGWEYRDGALRNAKGEVFAFEIMDDQSAM-SRVISVYVRNLQKLGIQVTQRTADY 476 Query: 397 SVFQTRAFGSGANGEPEFSAFLVGNGAVTGDSLTGLVSIIHSYNAATSLGVSNYGRYSNK 456 ++ Q R + + + ++ + + G+ + + AA G SN+ + Sbjct: 477 ALLQKRM----EDFDYDMTSIRFPDVSTPGNEMFDMFGS----KAADEKGSSNFWGLKDP 528 Query: 457 EVDALIERAAGTTDDAAREDLQRQASRLALTDVAIIP----LQHLNAFW 501 VD L+E + + R R+ L +IP H A+W Sbjct: 529 AVDRLVEALVAADSRSELQGAARALDRVLLNKYIVIPHWYSSSHRIAYW 577 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.133 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,238,750 Number of extensions: 51125 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 4 Length of query: 525 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 437 Effective length of database: 895,685 Effective search space: 391414345 Effective search space used: 391414345 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)