BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2439.p (320 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980968|ref|YP_001355211.1| transmembrane (dipeptide transp... 372 e-104 gi|152981104|ref|YP_001353092.1| ABC-type oligopeptide transport... 172 3e-44 gi|152982533|ref|YP_001351955.1| ABC-type transport systems, per... 144 1e-35 gi|152981225|ref|YP_001352895.1| ABC-type uncharacterized transp... 119 4e-28 >gi|152980968|ref|YP_001355211.1| transmembrane (dipeptide transport system permease) ABC transporter protein [Janthinobacterium sp. Marseille] Length = 325 Score = 372 bits (955), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/319 (57%), Positives = 252/319 (78%) Query: 2 LLRRALQSVLVIFVMSILAFVGINLVGNPIHLLVAPDAPLEEIQRASHALGLDLPMYQQY 61 +LRR QSVLV+ VMS+L F+G+ +GNPI +L++PDA E R A GLD P++QQY Sbjct: 5 ILRRLGQSVLVLAVMSLLVFIGVYAIGNPIDILLSPDADQFERARTIAAFGLDKPLWQQY 64 Query: 62 LRFVSNALHGDLGNSFVFNQPAIGLILERMPATFELAVAALLLSAVIGIPLGMWSGLRPG 121 F+ NA+ GDLG SF F A+GLILER+PAT ELA++A+L+S V+GIPLG+W+GLRP Sbjct: 65 FIFIQNAVSGDLGRSFAFGTSALGLILERLPATMELAISAILISIVLGIPLGLWAGLRPH 124 Query: 122 SRVHKLAMGFSVLGVTVPVFWLGLILILVFSVNLGWLPSGGRGPTTSLLGVQVSFLSWEG 181 S + K M S+LG ++P FW+GL+LI+VF+V LGWLP+ GRG TT LLG+ VSFLSW+G Sbjct: 125 SWIGKSIMAVSILGFSLPTFWVGLMLIMVFAVQLGWLPASGRGETTLLLGIPVSFLSWDG 184 Query: 182 LKYIVLPACTLALHNIALVMRMTEAGTREVAVQEYVKFARAKGVGAVRLMMRHIAPNVMI 241 LK+++LP+ LAL NIALV+R+T AG +E +Q+YVKFARAKG+ R++ H+ N++I Sbjct: 185 LKHLLLPSLNLALFNIALVIRLTRAGAQEALLQDYVKFARAKGLRNSRIIGVHVLKNILI 244 Query: 242 PIVTVMGIEFGHLIAFSLITETIFAWPGMGKLIIDSVLQLDRPVVVAYLMVVLLLYVVIN 301 PIVTV+ ++FG +IAF+++TE++FAWPGMGKLIIDS+ LDRPV+VAYLM+++ L+++IN Sbjct: 245 PIVTVIALQFGSIIAFAIVTESVFAWPGMGKLIIDSIRVLDRPVIVAYLMLIVALFILIN 304 Query: 302 FVVDVLYLILDPRLRTKSA 320 +VDV Y +LDPR+R A Sbjct: 305 LIVDVAYSLLDPRVRLSDA 323 >gi|152981104|ref|YP_001353092.1| ABC-type oligopeptide transport systems, permease component [Janthinobacterium sp. Marseille] Length = 316 Score = 172 bits (435), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 105/315 (33%), Positives = 185/315 (58%), Gaps = 6/315 (1%) Query: 2 LLRRALQSVLVIFVMSILAFVGINLV-GNPIHLLVAPDAPLEEIQRASHALGLDLPMYQQ 60 +L+R L ++ + +++L+F+ + L G+P++ + DAP + I A GLD P+ Q Sbjct: 5 ILKRLLYAIPIALSVTLLSFMLVYLAPGDPLNAIAPADAPADVIAALKSAYGLDKPVPVQ 64 Query: 61 YLRFVSNALHGDLGNSFVFNQPAIGLILERMPATFELAVAALLLSAVIGIPLGMWSGLRP 120 Y ++S A+ GDLG S + + ++ + T LA A + + G LG +G Sbjct: 65 YGMWLSRAVQGDLGTSIASGRQVVTEVMSAVSNTLLLAGVAGFIGVLFGCVLGALAGYWH 124 Query: 121 GSRVHKLAMGFSVLGVTVPVFWLGLILILVFSVNLGWLPSGGRGPTTSLLGVQVSFLSWE 180 G + ++A SV+GV+VP +WLGL+L ++FS+ LGW P+ G GP G ++ Sbjct: 125 GGWIDRIATFLSVIGVSVPHYWLGLVLTIIFSIWLGWFPAMGAGPG----GSSEWLWDYD 180 Query: 181 GLKYIVLPACTLALHNIALVMRMTEAGTREVAVQEYVKFARAKGVGAVRLMMRHIAPNVM 240 ++++VLPA TLA+ + ++ R A ++ QE+V RA+G+ + R + RHIA N Sbjct: 181 HIRHLVLPAITLAVIPMGIITRTVRALVADMLEQEFVIALRARGL-SNRAIFRHIAKNTA 239 Query: 241 IPIVTVMGIEFGHLIAFSLITETIFAWPGMGKLIIDSVLQLDRPVVVAYLMVVLLLYVVI 300 ++ V G++ G+L+ S++ ET+FAWPG G L+ ++ Q D P++ ++V+ + +V + Sbjct: 240 PTVLAVAGLQIGYLMGGSILVETVFAWPGTGFLLNTAIFQRDMPLLQGTILVLCMFFVGL 299 Query: 301 NFVVDVLYLILDPRL 315 N +VD+L +LDPR+ Sbjct: 300 NLIVDILQPLLDPRM 314 >gi|152982533|ref|YP_001351955.1| ABC-type transport systems, permease component [Janthinobacterium sp. Marseille] Length = 310 Score = 144 bits (362), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/319 (28%), Positives = 168/319 (52%), Gaps = 21/319 (6%) Query: 2 LLRRALQSVLVIFVMSILAFVGINLVGNPIHLLV--APDA-PLEEI-QRASHALGLDLPM 57 +L R L + V++ + L F+ IN+ L + PDA P E+ + GLD P+ Sbjct: 7 ILWRLLAGLGVLWGAATLTFIAINITAGDTALAIVGGPDAMPTAEVLAQVRKEYGLDDPL 66 Query: 58 YQQYLRFVSNALHGDLGNSFVFNQPAIGLILERMPATFELAVAALLLSAVIGIPLGMWSG 117 QY +++ GDLG S+ P + + +++ AT +LA++A +LS V+ + + + + Sbjct: 67 LTQYGNYIARLAKGDLGESYRLRIPVLKAVTQQLGATVQLALSAGVLSIVLSVVIALLTA 126 Query: 118 LRPGSRVHKLAMGFSVLGVTVPVFWLGLILILVFSVNLGWLPSGGRGPTTSLLGVQVSFL 177 R + + G + + P F +G++L+LVFS W P+ G Sbjct: 127 -RRAPWIRSIVSGAELTITSAPSFVIGILLLLVFSFYFHWFPASGS-------------- 171 Query: 178 SWEGLKYIVLPACTLALHNIALVMRMTEAGTREVAVQEYVKFARAKGVGAVRLMMRHIAP 237 +G + +VLP LAL ++ ++ +V Q ++ ARA+G+ + +RH Sbjct: 172 --QGWRALVLPTIALALPVAGVLTQVLRQALEDVLEQPFILTARARGMSDAGVRLRHALR 229 Query: 238 NVMIPIVTVMGIEFGHLIAFSLITETIFAWPGMGKLIIDSVLQLDRPVVVAYLMVVLLLY 297 + ++P+VT+ G F L+ +++ E +FA G+G+L++D+ D P+V+ ++ +Y Sbjct: 230 HALVPLVTLSGFVFASLLGGAVVVEMLFARQGVGRLMLDAANTKDVPIVLGITLLAAFIY 289 Query: 298 VVINFVVDVLYLILDPRLR 316 V++N VVDVLY ++DPR+R Sbjct: 290 VIVNIVVDVLYSLIDPRVR 308 >gi|152981225|ref|YP_001352895.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 354 Score = 119 bits (297), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 148/287 (51%), Gaps = 16/287 (5%) Query: 42 EEIQRASHALGLDLPMYQQYLRFVSNALHGDLGNSFVFNQPAIGLILERMPATFELAVAA 101 E + G D P +++ + + DLG SF ++ L++ ++P + L + Sbjct: 72 ERVAEIKALYGFDKPPVERFWQMLKGFATFDLGQSFYHHKDVWDLVVSKLPVSITLGMWT 131 Query: 102 LLLSAVIGIPLGMWSGLRPGSRVHKLAMGFSVLGVTVPVFWLGLILILVFSVN--LGWLP 159 L+ I +PLG+ +R GSR L+ ++G ++P F LG+ L+++F + W Sbjct: 132 FFLTYFISLPLGIAKAVREGSRFDSLSTIVVLIGYSIPGFILGVFLLVMFGGGSFVQWFS 191 Query: 160 SGGRGPTT------SLLGVQVSFLSWEGLKYIVLPACTLALHNIALVMRMTEAGTREVAV 213 RG T+ SLLG + +L W +I LP + A++ +T+ E Sbjct: 192 L--RGLTSDNWEQLSLLGKVLDYL-W----HIALPVTASVAGSFAMMTMLTKNTFLEEIR 244 Query: 214 QEYVKFARAKGVGAVRLMMRHIAPNVMIPIVTVMGIEF-GHLIAFSLITETIFAWPGMGK 272 ++YV ARAKG+ R++ +H+ N +IP+VT F G SL+ ET+F+ G+G Sbjct: 245 KQYVLTARAKGLSENRVLYKHVFRNALIPLVTGFPAAFIGAFFTGSLLIETLFSLDGLGL 304 Query: 273 LIIDSVLQLDRPVVVAYLMVVLLLYVVINFVVDVLYLILDPRLRTKS 319 L +SV++ D PVV+ L + L+ +V+ + D+ Y+ DPRL+ +S Sbjct: 305 LSYESVIRRDYPVVMGTLYLFTLVGLVVKLLGDLCYVWADPRLQFES 351 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.144 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 704,217 Number of extensions: 29416 Number of successful extensions: 144 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 5 Length of query: 320 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 237 Effective length of database: 914,170 Effective search space: 216658290 Effective search space used: 216658290 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)