BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2438.p (321 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide... 346 1e-96 gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport... 155 3e-39 gi|152981314|ref|YP_001351949.1| ABC-type transport systems, per... 149 2e-37 gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transp... 114 7e-27 >gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Janthinobacterium sp. Marseille] Length = 301 Score = 346 bits (888), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 172/289 (59%), Positives = 232/289 (80%) Query: 32 ESPWRVLARRFFKSRIGTAAALLLALMVVAAVASPLIAPQDPYDLAKVSILEAERSPGTL 91 E+P+R +R FF S++ T ++L L+V+AAV +P+IAPQ+PYDLA++ I+++ PG Sbjct: 11 ETPFRRFSRNFFASKVATLGFIILLLIVLAAVFAPVIAPQNPYDLAQIDIMDSRLEPGKQ 70 Query: 92 STDHTMRYVLGTDGAGRDMLSAILYGLRISLGIGVASALVALVLGTSLGLISAYFGGKVD 151 + DH++ YVLGTD GRDMLSAILYG+RIS+ +GV S +AL++G +LGL + YFGG+++ Sbjct: 71 NIDHSLTYVLGTDEQGRDMLSAILYGVRISIIVGVVSTAIALLIGLTLGLFAGYFGGRIE 130 Query: 152 ALLMRIVDVQLSVPTILVALVLLAVLGQGVDKTLMALVLVQWAIFARNVRGAALVERGKD 211 +L+MRI D+QLS P ILVAL+LLA++G G+ K ++ALV VQWA +AR R AALVER K+ Sbjct: 131 SLIMRIADIQLSFPPILVALILLALMGPGIGKIIIALVAVQWAYYARTARSAALVERKKE 190 Query: 212 YIEAALGQGLPARRIMFRHVLPNCVAPLIVTTTNQMANAITLEATMSFLGIGLPQTKPSL 271 YIEAA G GL R +F H+LPNC+ PLIV Q+A+AI+LEAT+SFLGIGLP T+PSL Sbjct: 191 YIEAATGLGLSPLRTVFHHLLPNCLPPLIVIAALQVASAISLEATLSFLGIGLPVTEPSL 250 Query: 272 GLLISNGFDYMLSNQYWISVFPGVALVLLVMAVSLVGDQLRLVLNPKLD 320 GLLI+NGFDYM+S +YWIS+FPG+AL+L V+A++LV DQLR VLNP+L Sbjct: 251 GLLIANGFDYMMSGKYWISLFPGIALLLTVVAINLVADQLRDVLNPRLQ 299 >gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport systems, permease component [Janthinobacterium sp. Marseille] Length = 298 Score = 155 bits (393), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 157/278 (56%), Gaps = 10/278 (3%) Query: 35 WRVLARRFFKSRIGTAAALLLALMVVAAVASPLIAPQDPYDLAKVSILEAERSPGTLSTD 94 W + R+ + + AAL++ L+V AAV +P +AP DPY + + L S G Sbjct: 24 WSKVLRQLMRDPVAMGAALVVFLIVCAAVFAPWLAPMDPYKGSMIKRLLPIGSEG----- 78 Query: 95 HTMRYVLGTDGAGRDMLSAILYGLRISLGIGVASALVALVLGTSLGLISAYFGGKVDALL 154 Y+LGTD GRDMLS ++YG R+SL +GV L A +GTS+GL++ Y GG+++ ++ Sbjct: 79 ----YLLGTDELGRDMLSRLMYGGRLSLLMGVTPVLAAFGIGTSIGLLAGYVGGRLNMII 134 Query: 155 MRIVDVQLSVPTILVALVLLAVLGQGVDKTLMALVLVQWAIFARNVRGAALVERGKDYIE 214 MR++DV + P++L+A+ + LG G+ +++AL LV R R DYIE Sbjct: 135 MRVLDVFYAFPSVLLAVAISGALGPGMTNSILALTLVFVPQVVRVAESVTTQVRKLDYIE 194 Query: 215 AALGQGLPARRIMFRHVLPNCVAPLIVTTTNQMANAITLEATMSFLGIGLPQTKPSLGLL 274 AA G A I+ HVL N + P+ V T ++ ++ L A +SFLG+G+ +P GL+ Sbjct: 195 AARMSGASAFSIIRVHVLGNVLGPVFVYATGLLSVSMILAAGLSFLGLGVKPPEPEWGLM 254 Query: 275 ISNGFDYMLSNQYWISVFPGVALVLLVMAVSLVGDQLR 312 ++ + N W++ PG+ + + + +L+ D +R Sbjct: 255 LNTLRSAIFRNP-WVAALPGLLIFITSIGFNLLADGVR 291 >gi|152981314|ref|YP_001351949.1| ABC-type transport systems, permease component [Janthinobacterium sp. Marseille] Length = 303 Score = 149 bits (377), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 167/302 (55%), Gaps = 15/302 (4%) Query: 14 QVEPTD-GAARPVGDARASESPWRVLARRFFKSRIGTA-AALLLALMVVAAVASPLIAPQ 71 Q+E D GAA AR + P R+ R K R G AAL + ++VA + L+ Sbjct: 8 QLEAPDFGAALEPSIARNAGFPLRLADWR--KLRPGLVLAALFVLFLIVATLQPSLLTSN 65 Query: 72 DPYDLAKVSILEAERSPGTLSTDHTMRYVLGTDGAGRDMLSAILYGLRISLGIGVASALV 131 DP S EA R+P S H LGTD GRD+ + ++YG++ SL +G+A+ + Sbjct: 66 DPL---AASAREAFRAP---SAAHW----LGTDENGRDVWTRLIYGVQPSLLMGLAATAI 115 Query: 132 ALVLGTSLGLISAYFGGKVDALLMRIVDVQLSVPTILVALVLLAVLGQGVDKTLMALVLV 191 L +G ++GL + +D LMR++DV L+ P +L+ALV++ GQG+ ++A+ + Sbjct: 116 GLSIGIAVGLFAGLGHRIIDNFLMRLIDVLLAFPDLLLALVIITFWGQGLVNAVIAVGVA 175 Query: 192 QWAIFARNVRGAALVERGKDYIEAALGQGLPARRIMFRHVLPNCVAPLIVTTTNQMANAI 251 +AR VR + R Y+EAA+ GL ++ RHVLPN + P+++ T + I Sbjct: 176 SVPRYARMVRAQTHIVRNAQYVEAAVTLGLRRSTVIIRHVLPNAIKPILILATIGIGGKI 235 Query: 252 TLEATMSFLGIGLPQTKPSLGLLISNGFDYMLSNQYWISVFPGVALVLLVMAVSLVGDQL 311 A +SFLG G P P G ++S G ++ LSN +W+ PGVA+ L V++++ +G +L Sbjct: 236 AAGAALSFLGFGAPPPSPEWGSMLSVGRNF-LSNAWWLVAAPGVAVTLTVVSITALGREL 294 Query: 312 RL 313 L Sbjct: 295 LL 296 >gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 347 Score = 114 bits (285), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 134/249 (53%), Gaps = 6/249 (2%) Query: 68 IAPQDPYDLAKVSILEAERSPGTLSTDHTMRYVLGTDGAGRDMLSAILYGLRISLGIGVA 127 I P + Y ++ +P S ++ LGTD GRD+++ +LYG R+S+ G+A Sbjct: 100 IYPLNHYHYDTLNYFATSPNPAPPSAENW----LGTDDRGRDVVARLLYGFRVSVLFGLA 155 Query: 128 SALVALVLGTSLGLISAYFGGKVDALLMRIVDVQLSVPTILVALVLLAVLGQGVDKTLMA 187 ++LG G I YF GK D R +++ ++P + + ++ ++ + L+ Sbjct: 156 LTFTGVLLGLITGAIQGYFAGKTDLFFQRFMEIWGAMPELYLLIIFASIFQPSIGLLLIL 215 Query: 188 LVLVQWAIFARNVRGAALVERGKDYIEAALGQGLPARRIMFRHVLPNCVAPLIVTTTNQM 247 L L W + VR L R +Y++AA GL +I++RHVLPN + P++ +M Sbjct: 216 LSLFGWMSLSDYVRADFLRNRNLEYVQAARALGLSNGQIIWRHVLPNSLTPVVTFLPFRM 275 Query: 248 ANAITLEATMSFLGIGLPQTKPSLGLLISNGFDYMLSNQYWISVFPGVALVLLVMAVSLV 307 + AI ++ FLG+G+P + SLG L++ G + + + +WI++ V L ++++ ++ + Sbjct: 276 SGAILALTSLDFLGLGVPPSTASLGELLAQGKNNL--DAWWIALSTFVVLTVMLLLLTNI 333 Query: 308 GDQLRLVLN 316 GD LR L+ Sbjct: 334 GDALRNSLD 342 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.139 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 673,092 Number of extensions: 25731 Number of successful extensions: 191 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 185 Number of HSP's successfully gapped: 4 Length of query: 321 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 238 Effective length of database: 914,170 Effective search space: 217572460 Effective search space used: 217572460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 129 (54.3 bits)