BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2437.p (319 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC tr... 375 e-105 gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport... 254 6e-69 gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transp... 223 8e-60 gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding pro... 222 2e-59 gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport... 192 2e-50 >gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 459 Score = 375 bits (964), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/317 (57%), Positives = 233/317 (73%) Query: 1 MALLEVRNLVTQFHTGAGVAKALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAP 60 MA L V+NL F GV KA++DVSF++ G+++G+VGESGSGKS+TA+S+M LIDAP Sbjct: 134 MATLTVQNLQMHFSAREGVVKAVEDVSFSVGPGRIMGLVGESGSGKSMTAYSIMGLIDAP 193 Query: 61 GRISGGEIIFKGENLREASAKRWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHR 120 G+I GG+I+ + ++L + S + ++RG+R+AM+FQDPMM+LNPV+RI Q+ E + H+ Sbjct: 194 GKIVGGKILLQEQDLLDLSPEAMRRIRGNRVAMIFQDPMMTLNPVLRIDTQMMEAVLAHQ 253 Query: 121 KASRKEIETRVCDALRRVGIPAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEP 180 S+ DAL RVGI +P+ER++ YPH+ SGGMRQRVAIA A++N PDLII DEP Sbjct: 254 DVSKATARAMARDALARVGIASPDERLQAYPHQFSGGMRQRVAIAIALLNKPDLIICDEP 313 Query: 181 TTALDVTIQAQILYEMKQLARESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQQ 240 TTALDVTIQ QILYEM++L RESGTALIWITHD+SV+ LADDLCVMYAG+I+E G VQQ Sbjct: 314 TTALDVTIQGQILYEMQKLCRESGTALIWITHDLSVIAGLADDLCVMYAGKIVESGTVQQ 373 Query: 241 VIQQPLHPYTRGLIDSLPQAEYQGKRLYSIPGATPPLLRLPPGCAFAPRCSRAERACQTI 300 V++Q HPYT GLI S P G+ L IPG TP LL LP GCAF RC RA C Sbjct: 374 VLEQTRHPYTYGLIASSPSRNIAGQPLRQIPGMTPSLLNLPSGCAFRTRCERATAECANT 433 Query: 301 PPVVAAGGREHRCFYPL 317 PP+ G RCF+P+ Sbjct: 434 PPLSIHGTHTWRCFHPV 450 >gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 332 Score = 254 bits (648), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 137/319 (42%), Positives = 189/319 (59%), Gaps = 6/319 (1%) Query: 3 LLEVRNLVTQFHTGAGVAKALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAPGR 62 L+ VR+L F G A ALD +SF L+ G+VLG++GESGSGKSVT +L+ L P R Sbjct: 5 LVSVRDLTVAF-VGNRRAHALDKISFDLQAGEVLGLLGESGSGKSVTLRTLLRL--HPQR 61 Query: 63 IS--GGEIIFKGENLREASAKRWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHR 120 + G + G ++ RG +MVFQ+P ++ +PV IG Q+ E I H Sbjct: 62 TTRISGSMEVDGMDVLALKGCELEAYRGGTASMVFQEPGLAFDPVYTIGQQITEAIRAHE 121 Query: 121 KASRKEIETRVCDALRRVGIPAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEP 180 + R L RV IP R YPHE+SGGMRQR IA A+ P L++ADEP Sbjct: 122 ALDHRSAMQRALQMLERVQIPQARRRYDAYPHELSGGMRQRAMIALALACKPRLLLADEP 181 Query: 181 TTALDVTIQAQILYEMKQLARESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQQ 240 TTALD T+Q QIL +++L +E+G ++I++THDI ++AD + VMY GRI+E V Sbjct: 182 TTALDATVQIQILLLLRELQKETGMSVIFVTHDIGAAVEVADKIAVMYGGRIVEENSVAG 241 Query: 241 VIQQPLHPYTRGLIDSLPQAEYQGKRLYSIPGATPPLLRLPPGCAFAPRCSRAERACQT- 299 ++ P HPYT GL+ S E +GK L ++PG+ P L LP GC+FAPRCS A + C + Sbjct: 242 IVHNPRHPYTAGLLASTVSTENRGKPLLAVPGSPPDLSALPLGCSFAPRCSNARQQCTSE 301 Query: 300 IPPVVAAGGREHRCFYPLS 318 P V++ G C+ P+S Sbjct: 302 KPQVISLNGERLACWNPVS 320 >gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transport system, duplicated ATPase component [Janthinobacterium sp. Marseille] Length = 533 Score = 223 bits (569), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 120/288 (41%), Positives = 176/288 (61%), Gaps = 14/288 (4%) Query: 1 MALLEVRNLVTQFHTGAGVAKALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLI-DA 59 M+LL+++NL F T +K ++DVSF++ G+ +VGESGSGK+VTA SL+ L DA Sbjct: 1 MSLLDIQNLQVSFDT----SKVVNDVSFSIAAGEKFALVGESGSGKTVTALSLLRLNQDA 56 Query: 60 PGRISGGEIIFKGENLREASAKRWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIH 119 GG+I+F+G+++ + + +RG+ +AM+FQ+PM +LNP+ IG Q+ E + +H Sbjct: 57 ---TYGGKILFEGQDILQKTEAAMRSVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMLH 113 Query: 120 RKASRKEIETRVCDALRRVGIPAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADE 179 S + R + L + GIP P+ R YPHE+SGG RQR IA A+ P L+IADE Sbjct: 114 EGISARAAALRTVELLDKTGIPEPQRRALSYPHELSGGQRQRAMIAMALACKPKLLIADE 173 Query: 180 PTTALDVTIQAQILYEMKQLARESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQ 239 PTTALDVTIQ QI+ + QL RE A++ ITHD+++V+ AD + VM GR++E Q Sbjct: 174 PTTALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGRLLEVATTQ 233 Query: 240 QVIQQPLHPYTRGLIDSLPQAEYQGKRLYSIPGATPPLLRLPP-GCAF 286 Q+ P YT+ L+ S P + + + A PLL+ C F Sbjct: 234 QLFSAPREAYTKKLLASQPH-----QLVNVVSEAATPLLKAEQVSCTF 276 Score = 172 bits (437), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 96/223 (43%), Positives = 140/223 (62%), Gaps = 7/223 (3%) Query: 33 GKVLGIVGESGSGKSVTAFSLMNLIDAPGRISGGEIIFKGENLREASAKRWSQLRGDRIA 92 G+ LGIVGESGSGKS +L+ L A + GEI F G+ + S LR R+ Sbjct: 301 GETLGIVGESGSGKSTLGLALLRLSGAHVK---GEIAFDGQAITHQSRDALRPLRA-RMQ 356 Query: 93 MVFQDPMMSLNPVMRIGAQLGETIAIHR-KASRKEIETRVCDALRRVGIPAPEERMRVYP 151 +VFQDP SL+P + +GE +A+H+ + I V D L+ VG+ A E M YP Sbjct: 357 IVFQDPFASLSPRRTVEQIVGEGLALHQPQLGPHGIRKAVADGLQEVGLSA--EMMTRYP 414 Query: 152 HEMSGGMRQRVAIANAIINHPDLIIADEPTTALDVTIQAQILYEMKQLARESGTALIWIT 211 HE SGG RQR+AIA A++ PDLI+ DEPT++LDV++Q Q+L + L ++ G A I+I+ Sbjct: 415 HEFSGGQRQRIAIARALVLKPDLILLDEPTSSLDVSVQHQVLLLLADLQKKYGMAYIFIS 474 Query: 212 HDISVVKDLADDLCVMYAGRIIERGPVQQVIQQPLHPYTRGLI 254 HD++V++ +A + VM GR++E+G Q V+ +P PYT+ L+ Sbjct: 475 HDLAVIRAMAHRVMVMKDGRVVEQGLTQTVLSKPSEPYTQRLL 517 >gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 579 Score = 222 bits (566), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 116/286 (40%), Positives = 176/286 (61%), Gaps = 16/286 (5%) Query: 3 LLEVRNLVTQF-HTGAGVAKALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAPG 61 L+EV NL +F H G V K +SF L +G+ L +VGESGSGKSVT+ +L+ L Sbjct: 12 LVEVENLHVRFGHGGPAVIKG---ISFALHRGECLALVGESGSGKSVTSRTLVGLTGHRS 68 Query: 62 RISGGEIIFKGENLREASAKRWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHRK 121 + + F G++LR + + W +RG RI V QD + SL+P+ +GA++ E + +H K Sbjct: 69 SLQADRLSFDGDDLRRFNERTWRDIRGRRIGFVMQDALGSLDPLRTVGAEVAEPLKLHAK 128 Query: 122 ASRKEIETRVCDALRRVGIPAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEPT 181 +++E E +V L VGIP PE R+ YPH++SGG+RQR IA+AI +P+L+IADEPT Sbjct: 129 LTKQEREEKVIALLHSVGIPQPESRLMQYPHQLSGGLRQRALIASAIACNPELLIADEPT 188 Query: 182 TALDVTIQAQILYEMKQLARESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQQV 241 TALD +QAQ+L ++ L R A++ ++HD +VV LAD + VM+ G I+E+GP+ + Sbjct: 189 TALDAAVQAQVLDLLESL-RTPDKAMLVVSHDFAVVSRLADRVAVMWHGEIVEQGPLDAI 247 Query: 242 IQQPLHPYTRGLIDSLPQAEYQG-----------KRLYSIPGATPP 276 + P HPYT+ L+ ++ + +G L ++P PP Sbjct: 248 LHDPQHPYTKSLLSAVSSVQKRGPVRQKIAVTEDGHLATLPSELPP 293 Score = 143 bits (361), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/258 (34%), Positives = 147/258 (56%), Gaps = 8/258 (3%) Query: 3 LLEVRNLVTQFHTGAGVAK-ALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAPG 61 ++EV NL F G + A+ +VSF L KG+ +GIVGESGSGK+ ++ L + P Sbjct: 302 VVEVNNLTKVFFGPDGSRRVAVSEVSFALRKGETVGIVGESGSGKTTLTRMVLGL-ETP- 359 Query: 62 RISGGEIIFKGENLREASAKRWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHRK 121 + G + + + + S + R RI +VFQDP+ S +P + L E + + Sbjct: 360 --NVGNVRLRDQVWSDLSDAQQRAER-KRIQVVFQDPLASFDPRYTVERVLFEALGVAGY 416 Query: 122 ASRKEIETRVCDALRRVGIPAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEPT 181 ++ R + L V + + ++ P E+SGG RQR+AIA A+ P+++I DEP Sbjct: 417 TDTEKTRARAIELLHLVRLD--QSYLQRRPIELSGGQRQRIAIARALAPEPEVLICDEPV 474 Query: 182 TALDVTIQAQILYEMKQLARESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQQV 241 +ALDV++QAQIL + L G + ++I+HD+ V+ ++D + VM G ++E G V++V Sbjct: 475 SALDVSVQAQILDLLIDLKDRLGLSCLFISHDLGVIYRVSDRILVMKDGIVVESGGVREV 534 Query: 242 IQQPLHPYTRGLIDSLPQ 259 + P H YT+ L+ ++PQ Sbjct: 535 FENPQHIYTQTLLSAIPQ 552 >gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 353 Score = 192 bits (488), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 111/280 (39%), Positives = 160/280 (57%), Gaps = 14/280 (5%) Query: 22 ALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAPGRISGGEIIFKGENLREASAK 81 A+D VSF++ KGK LGIVGESG GKS TA + L+ G +IF GE + E Sbjct: 46 AVDGVSFSVAKGKTLGIVGESGCGKSTTARLIARLVTP----DSGSMIFDGEGVAEFGGI 101 Query: 82 RWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHRKA---SRKEIETRVCDALRRV 138 + + R + + MVFQD SLNP + I ET+A +A S+ + R L RV Sbjct: 102 EFKEFRRN-LQMVFQDSFASLNPRLTIS----ETVAYGPQAHGVSKAQATERAHALLARV 156 Query: 139 GIPAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEPTTALDVTIQAQILYEMKQ 198 G+ PE+ YPHE+SGG RQRV IA A+ P L+I DE ALD ++QAQ+L +++ Sbjct: 157 GL-QPEQFASRYPHELSGGQRQRVNIARALAFEPRLVILDEAVAALDKSVQAQVLNLLQE 215 Query: 199 LARESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQQVIQQPLHPYTRGLIDSLP 258 L E ++I+HD+ VV ++D++ VMY G+++E GPV+ + HPYTR L+ ++P Sbjct: 216 LKAEHDLTYLFISHDLHVVHYISDEVMVMYMGQVVEMGPVEDIYGNSRHPYTRALLSAVP 275 Query: 259 QAEYQGKRLYS-IPGATPPLLRLPPGCAFAPRCSRAERAC 297 + + ++ + G P + P GC F RC AE C Sbjct: 276 SMDPANRTQHTPLSGDPPNPINPPSGCRFRERCPHAEAVC 315 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 761,670 Number of extensions: 31832 Number of successful extensions: 293 Number of sequences better than 1.0e-08: 55 Number of HSP's gapped: 235 Number of HSP's successfully gapped: 58 Length of query: 319 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 236 Effective length of database: 914,170 Effective search space: 215744120 Effective search space used: 215744120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)