BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2436.p (329 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982636|ref|YP_001355208.1| ABC-type transport system, ATPa... 366 e-103 gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport... 275 2e-75 gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding pro... 200 1e-52 gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC tr... 189 1e-49 gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transp... 186 2e-48 >gi|152982636|ref|YP_001355208.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 333 Score = 366 bits (940), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/337 (53%), Positives = 239/337 (70%), Gaps = 13/337 (3%) Query: 1 MRMTTMLTTNELSKSFSLKSSGLTRVMGKLGLTKPPAQR----VYAVNEVSLSIERGEVL 56 M +L ++SK F+ R+ G AQR V+AV+ +L+I GEV+ Sbjct: 1 MADQALLELRDVSKRFAKPLDTAARIAKIFG-----AQRHEEVVHAVDHANLAIHSGEVV 55 Query: 57 GLVGESGCGKSTVGRMIAGLLPATSGSLSFEGEDM----TKPSLQTHLNIQMVFQNPYAS 112 GLVGESGCGKST+GR+ GL ++G+ ++G DM T +T L +QM+FQ+PYAS Sbjct: 56 GLVGESGCGKSTLGRIAVGLHTLSAGTRWWKGADMAQLTTADRRRTQLAMQMIFQDPYAS 115 Query: 113 LNPRQRIDQVISEAAVYHGLVERKNASAFVADLLKQVGLDPSYAGRYPHQFSGGQRQRIA 172 LNPR RI ++ EA + HG+V+ +VA LL++VGLDP+ R+PHQFSGGQR RI Sbjct: 116 LNPRMRIQDIVGEAPLAHGMVKAAEQKDYVAALLQKVGLDPALVRRFPHQFSGGQRARIG 175 Query: 173 IARALALDPKFIVCDEAVSALDVSVQAQILNLFMELRETKQLTYLFISHNLAVVEYIADR 232 IARALA+ P+ +VCDEAV+ALDVS+QAQ+LNLF+ELR LTYLFISH+L VV +++DR Sbjct: 176 IARALAVRPELLVCDEAVAALDVSIQAQVLNLFIELRNELNLTYLFISHDLGVVRHVSDR 235 Query: 233 VAIMYLGRIVEIADKRSVFARPNHPYTQALMADAPRLDAKVVDHRPIQGELPSPLNPPAG 292 V IMYLGRIVE + +FA+PNHPYT AL+A AP+L+ + +D ++GE+PSPL+PP+G Sbjct: 236 VVIMYLGRIVESSPTIELFAQPNHPYTSALLASAPKLEVRKIDFVAVKGEIPSPLHPPSG 295 Query: 293 CTFHPRCPRAMLRCSQERPMLRSIGDGHWSACHLNGA 329 C FHPRCP AM RCS E+P+L+ I H+SACHLN A Sbjct: 296 CHFHPRCPHAMPRCSVEQPLLKEIAPQHFSACHLNDA 332 >gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 353 Score = 275 bits (704), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 140/296 (47%), Positives = 194/296 (65%), Gaps = 9/296 (3%) Query: 40 VYAVNEVSLSIERGEVLGLVGESGCGKSTVGRMIAGLLPATSGSLSFEGEDMTK----PS 95 V+AV+ VS S+ +G+ LG+VGESGCGKST R+IA L+ SGS+ F+GE + + Sbjct: 44 VHAVDGVSFSVAKGKTLGIVGESGCGKSTTARLIARLVTPDSGSMIFDGEGVAEFGGIEF 103 Query: 96 LQTHLNIQMVFQNPYASLNPRQRIDQVISEAAVYHGLVERKNASAFVADLLKQVGLDPS- 154 + N+QMVFQ+ +ASLNPR I + ++ HG V + A+ LL +VGL P Sbjct: 104 KEFRRNLQMVFQDSFASLNPRLTISETVAYGPQAHG-VSKAQATERAHALLARVGLQPEQ 162 Query: 155 YAGRYPHQFSGGQRQRIAIARALALDPKFIVCDEAVSALDVSVQAQILNLFMELRETKQL 214 +A RYPH+ SGGQRQR+ IARALA +P+ ++ DEAV+ALD SVQAQ+LNL EL+ L Sbjct: 163 FASRYPHELSGGQRQRVNIARALAFEPRLVILDEAVAALDKSVQAQVLNLLQELKAEHDL 222 Query: 215 TYLFISHNLAVVEYIADRVAIMYLGRIVEIADKRSVFARPNHPYTQALMADAPRLD-AKV 273 TYLFISH+L VV YI+D V +MY+G++VE+ ++ HPYT+AL++ P +D A Sbjct: 223 TYLFISHDLHVVHYISDEVMVMYMGQVVEMGPVEDIYGNSRHPYTRALLSAVPSMDPANR 282 Query: 274 VDHRPIQGELPSPLNPPAGCTFHPRCPRAMLRCSQERP--MLRSIGDGHWSACHLN 327 H P+ G+ P+P+NPP+GC F RCP A C+ + P M + H ACH+N Sbjct: 283 TQHTPLSGDPPNPINPPSGCRFRERCPHAEAVCAAQVPALMAAAGNAAHTVACHMN 338 >gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 579 Score = 200 bits (509), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 108/242 (44%), Positives = 154/242 (63%), Gaps = 4/242 (1%) Query: 35 PPAQRVYAVNEVSLSIERGEVLGLVGESGCGKSTVGRMIAGLLPATSGSLSFEGE---DM 91 P R AV+EVS ++ +GE +G+VGESG GK+T+ RM+ GL G++ + D+ Sbjct: 315 PDGSRRVAVSEVSFALRKGETVGIVGESGSGKTTLTRMVLGLETPNVGNVRLRDQVWSDL 374 Query: 92 TKPSLQTHLN-IQMVFQNPYASLNPRQRIDQVISEAAVYHGLVERKNASAFVADLLKQVG 150 + + IQ+VFQ+P AS +PR +++V+ EA G + + A +LL V Sbjct: 375 SDAQQRAERKRIQVVFQDPLASFDPRYTVERVLFEALGVAGYTDTEKTRARAIELLHLVR 434 Query: 151 LDPSYAGRYPHQFSGGQRQRIAIARALALDPKFIVCDEAVSALDVSVQAQILNLFMELRE 210 LD SY R P + SGGQRQRIAIARALA +P+ ++CDE VSALDVSVQAQIL+L ++L++ Sbjct: 435 LDQSYLQRRPIELSGGQRQRIAIARALAPEPEVLICDEPVSALDVSVQAQILDLLIDLKD 494 Query: 211 TKQLTYLFISHNLAVVEYIADRVAIMYLGRIVEIADKRSVFARPNHPYTQALMADAPRLD 270 L+ LFISH+L V+ ++DR+ +M G +VE R VF P H YTQ L++ P+L Sbjct: 495 RLGLSCLFISHDLGVIYRVSDRILVMKDGIVVESGGVREVFENPQHIYTQTLLSAIPQLG 554 Query: 271 AK 272 K Sbjct: 555 IK 556 Score = 152 bits (383), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 133/234 (56%), Gaps = 14/234 (5%) Query: 43 VNEVSLSIERGEVLGLVGESGCGKSTVGRMIAGLLPATSG----SLSFEGEDMTKPSLQT 98 + +S ++ RGE L LVGESG GKS R + GL S LSF+G+D+ + + +T Sbjct: 30 IKGISFALHRGECLALVGESGSGKSVTSRTLVGLTGHRSSLQADRLSFDGDDLRRFNERT 89 Query: 99 HLNIQ-----MVFQNPYASLNPRQRIDQVISEAAVYHGLVERKNASAFVADLLKQVGLDP 153 +I+ V Q+ SL+P + + ++E H + ++ V LL VG+ P Sbjct: 90 WRDIRGRRIGFVMQDALGSLDPLRTVGAEVAEPLKLHAKLTKQEREEKVIALLHSVGI-P 148 Query: 154 SYAGR---YPHQFSGGQRQRIAIARALALDPKFIVCDEAVSALDVSVQAQILNLFMELRE 210 R YPHQ SGG RQR IA A+A +P+ ++ DE +ALD +VQAQ+L+L LR Sbjct: 149 QPESRLMQYPHQLSGGLRQRALIASAIACNPELLIADEPTTALDAAVQAQVLDLLESLR- 207 Query: 211 TKQLTYLFISHNLAVVEYIADRVAIMYLGRIVEIADKRSVFARPNHPYTQALMA 264 T L +SH+ AVV +ADRVA+M+ G IVE ++ P HPYT++L++ Sbjct: 208 TPDKAMLVVSHDFAVVSRLADRVAVMWHGEIVEQGPLDAILHDPQHPYTKSLLS 261 >gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 459 Score = 189 bits (481), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 117/298 (39%), Positives = 160/298 (53%), Gaps = 14/298 (4%) Query: 40 VYAVNEVSLSIERGEVLGLVGESGCGKSTVGRMIAGLLPA----TSGSLSFEGEDMTKPS 95 V AV +VS S+ G ++GLVGESG GKS I GL+ A G + + +D+ S Sbjct: 153 VKAVEDVSFSVGPGRIMGLVGESGSGKSMTAYSIMGLIDAPGKIVGGKILLQEQDLLDLS 212 Query: 96 LQTHLNIQ-----MVFQNPYASLNPRQRIDQVISEAAVYHGLVERKNASAFVADLLKQVG 150 + I+ M+FQ+P +LNP RID + EA + H V + A A D L +VG Sbjct: 213 PEAMRRIRGNRVAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVSKATARAMARDALARVG 272 Query: 151 LDP--SYAGRYPHQFSGGQRQRIAIARALALDPKFIVCDEAVSALDVSVQAQILNLFMEL 208 + YPHQFSGG RQR+AIA AL P I+CDE +ALDV++Q QIL +L Sbjct: 273 IASPDERLQAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALDVTIQGQILYEMQKL 332 Query: 209 RETKQLTYLFISHNLAVVEYIADRVAIMYLGRIVEIADKRSVFARPNHPYTQALMADAPR 268 ++I+H+L+V+ +AD + +MY G+IVE + V + HPYT L+A +P Sbjct: 333 CRESGTALIWITHDLSVIAGLADDLCVMYAGKIVESGTVQQVLEQTRHPYTYGLIASSPS 392 Query: 269 LDAKVVDHRPIQGELPSPLNPPAGCTFHPRCPRAMLRCSQERPMLRSIGDGH-WSACH 325 + R I G PS LN P+GC F RC RA C+ P+ SI H W H Sbjct: 393 RNIAGQPLRQIPGMTPSLLNLPSGCAFRTRCERATAECANTPPL--SIHGTHTWRCFH 448 >gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transport system, duplicated ATPase component [Janthinobacterium sp. Marseille] Length = 533 Score = 186 bits (472), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 100/218 (45%), Positives = 143/218 (65%), Gaps = 6/218 (2%) Query: 53 GEVLGLVGESGCGKSTVGRMIAGLLPA-TSGSLSFEGEDMTKPSLQT----HLNIQMVFQ 107 GE LG+VGESG GKST+G + L A G ++F+G+ +T S +Q+VFQ Sbjct: 301 GETLGIVGESGSGKSTLGLALLRLSGAHVKGEIAFDGQAITHQSRDALRPLRARMQIVFQ 360 Query: 108 NPYASLNPRQRIDQVISEA-AVYHGLVERKNASAFVADLLKQVGLDPSYAGRYPHQFSGG 166 +P+ASL+PR+ ++Q++ E A++ + VAD L++VGL RYPH+FSGG Sbjct: 361 DPFASLSPRRTVEQIVGEGLALHQPQLGPHGIRKAVADGLQEVGLSAEMMTRYPHEFSGG 420 Query: 167 QRQRIAIARALALDPKFIVCDEAVSALDVSVQAQILNLFMELRETKQLTYLFISHNLAVV 226 QRQRIAIARAL L P I+ DE S+LDVSVQ Q+L L +L++ + Y+FISH+LAV+ Sbjct: 421 QRQRIAIARALVLKPDLILLDEPTSSLDVSVQHQVLLLLADLQKKYGMAYIFISHDLAVI 480 Query: 227 EYIADRVAIMYLGRIVEIADKRSVFARPNHPYTQALMA 264 +A RV +M GR+VE ++V ++P+ PYTQ L+A Sbjct: 481 RAMAHRVMVMKDGRVVEQGLTQTVLSKPSEPYTQRLLA 518 Score = 159 bits (403), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 97/264 (36%), Positives = 147/264 (55%), Gaps = 17/264 (6%) Query: 43 VNEVSLSIERGEVLGLVGESGCGKSTVGRMIAGLLPATS--GSLSFEGEDM---TKPSLQ 97 VN+VS SI GE LVGESG GK+ + L + G + FEG+D+ T+ +++ Sbjct: 19 VNDVSFSIAAGEKFALVGESGSGKTVTALSLLRLNQDATYGGKILFEGQDILQKTEAAMR 78 Query: 98 T--HLNIQMVFQNPYASLNPRQRIDQVISEAAVYHGLVERKNASAFVADLLKQVGL-DPS 154 + ++ M+FQ P +LNP I I+E + H + + A+ +LL + G+ +P Sbjct: 79 SVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMLHEGISARAAALRTVELLDKTGIPEPQ 138 Query: 155 Y-AGRYPHQFSGGQRQRIAIARALALDPKFIVCDEAVSALDVSVQAQILNLFMELRETKQ 213 A YPH+ SGGQRQR IA ALA PK ++ DE +ALDV++Q QI+ L +L+ + Sbjct: 139 RRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQIVELLNQLQREEN 198 Query: 214 LTYLFISHNLAVVEYIADRVAIMYLGRIVEIADKRSVFARPNHPYTQALMADAPRLDAKV 273 + L I+H+L +V + ADRV +M GR++E+A + +F+ P YT+ L+A P V Sbjct: 199 MAVLMITHDLNLVRHFADRVGVMEKGRLLEVATTQQLFSAPREAYTKKLLASQPHQLVNV 258 Query: 274 VDHRPIQGELPSPL--NPPAGCTF 295 V E +PL CTF Sbjct: 259 VS------EAATPLLKAEQVSCTF 276 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 676,206 Number of extensions: 25742 Number of successful extensions: 237 Number of sequences better than 1.0e-08: 55 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 58 Length of query: 329 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 245 Effective length of database: 910,473 Effective search space: 223065885 Effective search space used: 223065885 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)