BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2414.p
         (696 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979994|ref|YP_001353776.1| FlhA flagellar biosynthesis pro...   267   2e-72

>gi|152979994|ref|YP_001353776.1| FlhA flagellar biosynthesis
           protein [Janthinobacterium sp. Marseille]
          Length = 694

 Score =  267 bits (682), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/343 (41%), Positives = 238/343 (69%), Gaps = 20/343 (5%)

Query: 12  KFAAKLAQRAELIVAA--FVIGIVFMLVLPMPVWLLDMLIALSLCISGLIVIVAMYMPGP 69
           K  A +  +    VAA   +I ++ M+VLP+P  +LD+  + ++ +S ++++ A+Y   P
Sbjct: 5   KLPAWMTGQGSRAVAAPLIIIMMLSMMVLPLPAIVLDIFFSFNIALSIIVLLTALYTVKP 64

Query: 70  TAFSTFPAVLLLTTLFRLAISVSTTRLILLEGD-----AGHIVETFGNFVVGGNLVVGLV 124
             F  FP VLL++T+ RL+++V++TR++L EG      AG ++E FG+F++GGN  VG+V
Sbjct: 65  LDFMVFPTVLLVSTMLRLSLNVASTRVVLTEGHNGPDAAGKVIEAFGHFLIGGNYTVGIV 124

Query: 125 IFLILTVVQFIVITKGSERVSEVSARFSLDAMPGKQMSIDSDLRAGILTAEEAKEKRAKL 184
           +F+ILT++ F V+TKG+ R++EV ARF+LDAMPGKQM+ID+DL AG++  ++A+ +R ++
Sbjct: 125 VFVILTIINFTVVTKGAGRIAEVGARFALDAMPGKQMAIDADLNAGLIGEQDARLRRTQV 184

Query: 185 GQESQLHGAMDGAMKFVKGDAIAGICIVAINLIGGISIGIIQRNLDAAESMRVYSILSIG 244
            QE++ +GAMDGA K+V+GDAIAGI +  IN++GG+ +G++Q ++  + ++  Y++L+IG
Sbjct: 185 AQEAEFYGAMDGASKYVRGDAIAGIIVTVINVVGGLVVGMVQHDMGFSAALENYTLLAIG 244

Query: 245 DALIAQIPALLISLGAGVITTRVSKDEEPGQSTNIGRDLVGELFAEPRALLTAAAIMLLF 304
           D L+AQIP+L+IS  AG++ +RV+ ++      +IG  LVG+LFA P+ L   AAI+   
Sbjct: 245 DGLVAQIPSLIISTAAGIVVSRVASEQ------DIGGQLVGQLFARPQVLYITAAIIGGM 298

Query: 305 AAIPGMPSMVFIILALGLFVAGMVGVLKPLVDAQSKLEAEEIE 347
             IPGMP + F      LF+A ++     L+ +Q  L+A E+E
Sbjct: 299 GLIPGMPHVSF------LFLASLMAGAAYLI-SQRNLKAPEVE 334


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.139    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,406,025
Number of extensions: 55588
Number of successful extensions: 224
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 606
Effective length of database: 888,291
Effective search space: 538304346
Effective search space used: 538304346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)