BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2410.p (459 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980499|ref|YP_001353128.1| FliI flagellum specific ATP syn... 328 5e-91 gi|152980404|ref|YP_001355317.1| F0F1 ATP synthase subunit beta ... 140 1e-34 gi|152980082|ref|YP_001355319.1| F-type H+-transporting ATPase a... 114 1e-26 gi|152980394|ref|YP_001352312.1| transcription termination facto... 70 4e-13 >gi|152980499|ref|YP_001353128.1| FliI flagellum specific ATP synthase [Janthinobacterium sp. Marseille] Length = 448 Score = 328 bits (840), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 200/450 (44%), Positives = 266/450 (59%), Gaps = 36/450 (8%) Query: 33 PGFVSFGKVSQVLGTLVEAHMPPVQIGELCHLRDPHVEGPPILAEVVGFTDKAAILSALS 92 P VS G++++V G ++EA + +G C + P G I AEVVGF + L S Sbjct: 8 PMLVS-GRITRVAGLVMEAVGLKLAVGSACTV--PLANGARIEAEVVGFENDRLFLMPQS 64 Query: 93 PLEGVSSSTIIEPLR--------------------RAHSIEVGDHLFGCVLDGFGRWMFR 132 +EG+ T + P+ R + VG L G VLDG GR + Sbjct: 65 DVEGIVPGTRVYPVEVVQSLPRPGAVTHPRRRPSDRGRHLPVGIELLGRVLDGAGRPLDN 124 Query: 133 -APAAAENVA--TWRAMSPVMRDAPKATDRPRISVPLATGVRAIDGLLTMGTGQRIGVFA 189 P A + A RA +P+ R AP I+ L GVRAI+ +LT+G GQR+G+FA Sbjct: 125 LGPLNAAHAAPLNVRAANPLSR-AP-------ITDVLDVGVRAINSMLTVGRGQRMGLFA 176 Query: 190 GPGCGKTTLMAAIARGCEAQAIVFGLIGERGRELNEFLEHELDAELIRKTVVVCATSDRT 249 G G GK+ L+ +AR A IV GLIGERGRE+ EF+E L AE + ++VVV A +D Sbjct: 177 GSGVGKSVLLGMMARYTTADVIVVGLIGERGREVKEFIEQILGAEGLARSVVVAAPADTP 236 Query: 250 SMERARAAFTATAIAEAFRDRGMKVLLLVDSLTRFARAQREIGLAAGEPPARGGFTPSVY 309 + R + A ATAIAE FRD G VLL++DSLTR+A AQREI LA GEPPA G+ PSV+ Sbjct: 237 PLMRLQGAAYATAIAEHFRDEGKDVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVF 296 Query: 310 TMLPRLIERAGGTPQ--GSITAMYTVLVDGESVSDPIGDEAKSLLDGHILLTRKLAEQGH 367 LP L+ERAG + GSITA YTVL +G+ DPI D A+++LDGHI+L R LAE GH Sbjct: 297 AKLPALVERAGNGKEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLNRSLAEAGH 356 Query: 368 YPAIDVLASISRVMSNVTTREHRKAASHFRELMARYQEMELLIRLGEYKSGTDPVADRAV 427 YPAID+ SISR M N+TT EH+K ++L +RYQ LI +G Y +G+DPV D A+ Sbjct: 357 YPAIDIEQSISRAMHNITTPEHQKQTRKLKQLTSRYQRNRDLISVGAYSAGSDPVLDEAI 416 Query: 428 KLRAEQLAFLRQDTSTSAPFQPTLDKLMEL 457 L ++ +FL+QD + +L +L L Sbjct: 417 ALNSKIESFLQQDITERCGISESLGQLASL 446 >gi|152980404|ref|YP_001355317.1| F0F1 ATP synthase subunit beta [Janthinobacterium sp. Marseille] Length = 466 Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 120/417 (28%), Positives = 192/417 (46%), Gaps = 28/417 (6%) Query: 39 GKVSQVLGTLVEAHMPPVQIGELCHLRDPHVEGPPILAEVVG-FTDKAAILSALSPLEGV 97 GK+ Q +G +V+ P + ++ + G + EV D AL +G+ Sbjct: 4 GKIVQCIGAVVDVEFPRNAMPKIYDAL--KMAGSELTLEVQQQLGDGIVRTIALGTSDGL 61 Query: 98 SSSTIIEPLRRAHSIEVGDHLFGCVLDGFGRWMFR-APAAAENVATWRAMSPVMRDAPKA 156 II+ ++ VG G ++D G + P + E A+ +P + + Sbjct: 62 RRGMIIQNTGNPITVPVGTATLGRIMDVLGNPIDECGPVSHERTASIHRKAPAYDELSPS 121 Query: 157 TDRPRISVPLATGVRAIDGLLTMGTGQRIGVFAGPGCGKT-TLMAAIARGCEAQA--IVF 213 D L TG++ ID + G ++G+F G G GKT +M I +A + VF Sbjct: 122 QDL------LETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 175 Query: 214 GLIGERGRELNEFLEHELDAELI-------RKTVVVCATSDRTSMERARAAFTATAIAEA 266 +GER RE N+F DA+++ K +V + R R A T +AEA Sbjct: 176 AGVGERTREGNDFYHEMADAKVVDLENPANSKVAMVYGQMNEPPGNRLRVALTGLTMAEA 235 Query: 267 FRDRGMKVLLLVDSLTRFARAQREIGLAAGEPPARGGFTPSVYTMLPRLIERAGGTPQGS 326 FRD G VL VD++ RF A E+ G P+ G+ P++ + RL ER T GS Sbjct: 236 FRDEGKDVLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGS 295 Query: 327 ITAMYTVLVDGESVSDPIGDEAKSLLDGHILLTRKLAEQGHYPAIDVLASISRVMSN-VT 385 IT++ V V + ++DP + LD ++L+R +A G YPA+D L S SR + V Sbjct: 296 ITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPLVV 355 Query: 386 TREHRKAASHFRELMARYQEMELLIRLGEYKSGTDPVA--DRAVKLRAEQLA-FLRQ 439 ++H A + + RY+E+ +I + G D +A D+ + RA ++ FL Q Sbjct: 356 GQDHYDTARAVQGTLQRYKELRDIIAI----LGMDELAPEDKLLVARARKMQRFLSQ 408 >gi|152980082|ref|YP_001355319.1| F-type H+-transporting ATPase alpha chain [Janthinobacterium sp. Marseille] Length = 511 Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/333 (25%), Positives = 149/333 (44%), Gaps = 22/333 (6%) Query: 91 LSPLEGVSSSTIIEPLRRAHSIEVGDHLFGCVLDGFGRWMFRAPAAAENVATWRAMSPVM 150 L E +S ++ R + +G L G V++ G+ P + + +P+ Sbjct: 76 LGEYEHISEGDTVKCTGRILEVPIGPELCGRVVNALGQ-----PIDGKGPINTKLTTPIE 130 Query: 151 RDAPKATDRPRISVPLATGVRAIDGLLTMGTGQRIGVFAGPGCGKTTLM--AAIARGCEA 208 + AP R + P+ TG++AID ++ +G GQR + GKT + A I + + Sbjct: 131 KIAPGVIARQSVDQPMQTGIKAIDAMVPIGRGQRELIIGDRQTGKTAVAIDAIINQKGQG 190 Query: 209 QAIVFGLIGERGRELNEFLEHELDAELIRKTVVVCATSDRTSMERARAAFTATAIAEAFR 268 ++ IG++ + + + T+VV AT+ ++ + +A++ A+ E FR Sbjct: 191 VTCIYVAIGQKASSIKNIVRALEQHGAMEYTIVVAATASESAAMQFVSAYSGCAMGEYFR 250 Query: 269 DRGMKVLLLVDSLTRFARAQREIGLAAGEPPARGGFTPSVYTMLPRLIERAGGT------ 322 DRG L++ D L++ A A R++ L PP R F V+ + RL+ERA Sbjct: 251 DRGEDALIVYDDLSKQAVAYRQVSLLLRRPPGREAFPGDVFYLHSRLLERAARVNADYVE 310 Query: 323 ---------PQGSITAMYTVLVDGESVSDPIGDEAKSLLDGHILLTRKLAEQGHYPAIDV 373 GS+TA+ + VS + S+ DG I L L G PAI+ Sbjct: 311 AFTKGAVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETSLFNSGVRPAINA 370 Query: 374 LASISRVMSNVTTREHRKAASHFRELMARYQEM 406 S+SRV T+ + + R +A+Y+E+ Sbjct: 371 GISVSRVGGAAQTKVIKGLSGGIRTDLAQYREL 403 >gi|152980394|ref|YP_001352312.1| transcription termination factor Rho [Janthinobacterium sp. Marseille] Length = 421 Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 17/254 (6%) Query: 133 APAAAENVATWRAMSPVMRDAPKATDRPRISVPLATGVRAIDGLLTMGTGQRIGVFAGPG 192 +P A+++ + ++P+ + P +R TG R ID + +G GQR + A P Sbjct: 123 SPEASKHRILFENLTPLHPNKPLLLERDMRGEENITG-RIIDLIAPIGKGQRGLLVASPK 181 Query: 193 CGKTTLMAAIARGC-----EAQAIVFGLIGERGRELNEFLEHELDAELIRKTVVVCATSD 247 GK+ ++ IA EA IV LI ER E+ E ++ + E VV +T D Sbjct: 182 SGKSVMLQHIAHAITTNHPEAVMIVL-LIDERPEEVTE-MQRSVRGE------VVASTFD 233 Query: 248 RTSMERARAAFTATAIAEAFRDRGMKVLLLVDSLTRFARAQREIGLAAGEPPARGGFTPS 307 + + A A+ + V++L+DS+TR ARA + A+G+ GG + Sbjct: 234 EPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLT-GGVDAN 292 Query: 308 VYTMLPRLIERAGGTPQ-GSITAMYTVLVD-GESVSDPIGDEAKSLLDGHILLTRKLAEQ 365 R A + GS+T + T L++ G + D I +E K + + L R+LAE+ Sbjct: 293 ALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEK 352 Query: 366 GHYPAIDVLASISR 379 YPAI++ S +R Sbjct: 353 RVYPAINLNKSGTR 366 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,039,027 Number of extensions: 43560 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 168 Number of HSP's successfully gapped: 4 Length of query: 459 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 373 Effective length of database: 903,079 Effective search space: 336848467 Effective search space used: 336848467 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)