BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2406.p
         (219 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979946|ref|YP_001353121.1| flagellar biosynthesis protein ...   127   4e-31

>gi|152979946|ref|YP_001353121.1| flagellar biosynthesis protein
           FliP [Janthinobacterium sp. Marseille]
          Length = 252

 Score =  127 bits (320), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/201 (37%), Positives = 123/201 (61%), Gaps = 16/201 (7%)

Query: 22  PLLVVTTTSFLKISLVLLVLRNAIGVQQVPPTLAIYGISLALSVFIMAPTVQEIGVHALQ 81
           P +++  TSF +I +VL +LR A+G Q  PP   I G+SL L++F+M+P + +I V A Q
Sbjct: 63  PAVLLMMTSFTRIIIVLSLLRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQ 122

Query: 82  MDSSQVSSRTTPLLVKAQESFE----PLRKFMMKVSRPEQRELFLASARKLWPKDVAKEA 137
             S           ++ QE+ +    PL+ FM+K +R     L++  ++   P+    E 
Sbjct: 123 PFSQNK--------IQMQEALDKAVAPLKTFMIKQTRESDLALYVKLSKG--PELQGPED 172

Query: 138 RPSDALVLIPAFVVSELQAGYEIGFLIYIPFVIIDLLISNLLMALGMQQVSPQTITIPLK 197
            P    +L+PAFV SEL+  ++I F I+IPF+IID++++++LM++GM  VSP  + +P K
Sbjct: 173 IPLR--ILVPAFVTSELKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFK 230

Query: 198 LLLFTLVAGWGKLLNALALSY 218
           L+LF LV GW  L+ +LA S+
Sbjct: 231 LMLFVLVDGWQLLIGSLAQSF 251


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.139    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 395,919
Number of extensions: 13515
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 139
Effective length of database: 925,261
Effective search space: 128611279
Effective search space used: 128611279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)