BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2396.p
         (701 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980977|ref|YP_001355054.1| PilQ type IV pilus assembly pro...    93   5e-20
gi|152981036|ref|YP_001355006.1| pilus assembly protein CpaC [Ja...    69   1e-12

>gi|152980977|ref|YP_001355054.1| PilQ type IV pilus assembly
           protein [Janthinobacterium sp. Marseille]
          Length = 686

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 135/295 (45%), Gaps = 51/295 (17%)

Query: 308 ADPSLNAIMIYDNINKRDMYASLIAELDVQPQQIEIEALIVDIDRSKLSDMG--VEWGV- 364
            DP  N + I D  +K +   +L+A+ D+  +Q+ IEA IV+ D    S +G  + +GV 
Sbjct: 404 VDPRTNQLFITDIASKLEEIRALVAKTDIATRQVMIEARIVEADDKFSSSLGAKLSFGVQ 463

Query: 365 ---------RAGAVNSTINATTAASQGLNLP-------LPGA---TLLISNAARFYA-RL 404
                    R  +  + I   T     +NLP        PG+   TL  + A RF    L
Sbjct: 464 NQGNYQLGGRQTSTTTAIGPPTLGGSAVNLPASTINSNTPGSVALTLFNAAATRFIGLEL 523

Query: 405 KAMESNGDAHVLATPTVLTLDNVAAVLDL-SRSAYVSLVGERVADLADITAGTKLRVIPR 463
            A+E++G   V+++P V+T D + A+++  +   Y          ++   A  KL V P+
Sbjct: 524 SALEADGKGKVISSPRVITADQLKALIEQGTELPYQQATSSGATSVSFRKANLKLEVTPQ 583

Query: 464 IIHDGGQTRVRLEVDIEDGSLDSNDNGNSGNSNNNTVSTSVTRS-------TISTQAIID 516
           I  DG    V L+VD+                N +TV    TRS        + TQ +ID
Sbjct: 584 ITPDGN---VILDVDV----------------NKDTVGVE-TRSGFAIDTKHVKTQVLID 623

Query: 517 SQQTLMIGGYRAEALSKNKQKVPVLGDLPVLGGLFRSESQSTSTKERLFLITPRI 571
           +  T++IGG   +    +  KVP  GD+PV G LF++  ++    E L  +TP+I
Sbjct: 624 NGGTVVIGGIFQQTERDSVSKVPFFGDIPVFGNLFKTTGRTNDKTELLIFLTPKI 678


>gi|152981036|ref|YP_001355006.1| pilus assembly protein CpaC
           [Janthinobacterium sp. Marseille]
          Length = 429

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 111/241 (46%), Gaps = 23/241 (9%)

Query: 341 IEIEALIVDIDRSKLSDMGVEWGVRA--GAVNS--TINATTAASQGLNLPLPGATLLISN 396
           ++I+  IV+  R+ L + G ++      GA  S    N +T  S  +  P+  A  L+ +
Sbjct: 157 VQIDVQIVEFSRNVLKEAGFDFIFNQNRGATFSFGLNNFSTILSSTVQTPVSQAFNLLGS 216

Query: 397 AARFYARLKAMESNGDAHVLATPTVLTLDNVAAV------LDLSRSAYVSLVGERVADLA 450
            +   AR+K +E NG A VLA P+++ L   +A       L + +S      G     + 
Sbjct: 217 TS-VNARVKLIEQNGLARVLARPSLIALSGQSASFLAGGELPVPQSG-----GLGTTTII 270

Query: 451 DITAGTKLRVIPRIIHDGGQTRVRLEVDIEDGSLDSNDNGNSGNSNNNTVSTSVTRSTIS 510
               G  L V P ++      R+ L+V  E   LD     N+  +NN  +    TR T +
Sbjct: 271 YKAFGIGLTVTPTVLS---ANRIALKVAPEASDLDY---ANAIVTNNMMIPAISTRRTET 324

Query: 511 TQAIIDSQQTLMIGGYRAEALSKNKQKVPVLGDLPVLGGLFRSESQSTSTKERLFLITPR 570
           T  + D + + +IGG  +     N  KVP LGDLP+LG  FRS   S   KE + + TP 
Sbjct: 325 TLELGDGE-SFVIGGLVSRTTKSNVNKVPFLGDLPILGPFFRSMQYSQDEKELVIIATPH 383

Query: 571 I 571
           +
Sbjct: 384 L 384


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,289,284
Number of extensions: 48613
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 701
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 611
Effective length of database: 888,291
Effective search space: 542745801
Effective search space used: 542745801
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 133 (55.8 bits)