BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2391.p (539 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981122|ref|YP_001352378.1| general secretion pathway prote... 140 2e-34 gi|152980438|ref|YP_001354686.1| PilB type IV pilus assembly pro... 123 4e-29 gi|152980378|ref|YP_001352030.1| PilT twitching motility protein... 104 2e-23 gi|152982669|ref|YP_001353760.1| twitching motility protein PilU... 86 4e-18 gi|152980677|ref|YP_001352029.1| PilU twitching motility protein... 84 2e-17 >gi|152981122|ref|YP_001352378.1| general secretion pathway protein E [Janthinobacterium sp. Marseille] Length = 599 Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 121/394 (30%), Positives = 192/394 (48%), Gaps = 32/394 (8%) Query: 105 QAERNQEHSMMQVTAKEMLNKACRVRASDIHLRVRKNCTEIYFRIHNDLLPVGGQTREYG 164 Q + N +H + V + A RASDIHL +++ I FRI L Q + Sbjct: 205 QVDANDQHIINIV--DWLWQYAFEQRASDIHLEPKRDLCAIRFRIDGVL----HQVYQVP 258 Query: 165 ERLLATLYGAMTSVSDSSYKPTER-QDASIADRDKLPPELYGVRIATVPTNEGSLMVLRL 223 ++ + + + R QD I R E+ +R++T+PT G +V+R+ Sbjct: 259 PTVMIAMTARIKLLGRMDVIEKRRPQDGRIKTRTNNGQEV-ELRLSTMPTAFGEKLVMRI 317 Query: 224 LYNDVGENLDLGSLGFSAQQVSDLQRLKEQPIGMNIISGPTGSGKSTTLQRVLNGQILEG 283 DV L LGF +L +P G+ +++GPTGSGK+TTL L Sbjct: 318 FDPDVVVK-SLPELGFPPDDAQRWDKLTTRPHGIILVTGPTGSGKTTTLYTTLKAL---A 373 Query: 284 EGKLHVLTIEDPVEYPIEGAVQTTITNAHTEEERSRLFSAAISNAMRLDPDTIMIGEIRD 343 +++V T+EDP+E V+ + + F+ + + MR DPD IM+GEIRD Sbjct: 374 TSEVNVCTVEDPIEM-----VEGSFNQMQVQHGIDLSFADGVRSLMRQDPDIIMVGEIRD 428 Query: 344 RASAQNALRASMTGHQIWTTLHANSALAIVDRLIDLGLQQSLVLDHTVITGLISQRLVKQ 403 +A+ A++A++TGH + +TLH N A + V RL++LG+ L+ T + G+++QRL + Sbjct: 429 LETAEMAIQAALTGHLVLSTLHTNDAPSAVMRLLELGVPYYLL--ETTLIGIMAQRLTRT 486 Query: 404 LCPHCKRPLLAHLDQVPAALLARLRQVIPDRLQDVCISGP-GCEFCSHRGTIGRTVVAEV 462 LC HCK P LD+V +L +P + I P GC C G GRT + E+ Sbjct: 487 LCNHCKSPDGEMLDEVWESLSE--GSALP---KPAVIYRPVGCPECRQTGYRGRTGLYEL 541 Query: 463 IVPDESFFRHLRMGEKCQAWRHWKESLGGRSIAD 496 + ++F + + + A R +SIAD Sbjct: 542 LTVTQTFSKMITVETDIHALRQ-------QSIAD 568 >gi|152980438|ref|YP_001354686.1| PilB type IV pilus assembly protein [Janthinobacterium sp. Marseille] Length = 561 Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 113/404 (27%), Positives = 191/404 (47%), Gaps = 54/404 (13%) Query: 120 KEMLNKACRVRASDIHLRVRKNCTEIYFRIHNDLLPVGGQTREYGERLLATLYGAMTSVS 179 +++L A + ASD+H + I FR+ L + E+L + + + S Sbjct: 183 QKILVDAINLGASDLHFEPFEKFYRIRFRVDGVLRDIAQPPLAIKEKLASRI--KVISKL 240 Query: 180 DSSYK--PTERQDASIADRDKLPPELYGVRIATVPTNEGSLMVLRLLYNDVGENLDLGSL 237 D S K P + + + + + R++T+PT G +V+R+L + + + +L Sbjct: 241 DISEKRVPQDGRMKLVMSKTRS----IDFRVSTLPTLFGEKIVMRILDGSQAQ-MGIEAL 295 Query: 238 GFSAQQVSDLQRLKEQPIGMNIISGPTGSGKSTTLQRVLNGQILEGEGKLHVLTIEDPVE 297 G+ Q L ++P GM +++GPTGSGK+ +L LN IL G +++ T EDP E Sbjct: 296 GYDPDQKETLLNAIQRPYGMVLVTGPTGSGKTVSLYTCLN--ILNKPG-INISTAEDPAE 352 Query: 298 YPIEGAVQTTITNAHTEEERSRL-FSAAISNAMRLDPDTIMIGEIRDRASAQNALRASMT 356 + G Q + + R+ L F A+ +R DPD IM+GEIRD +A A++A+ T Sbjct: 353 INLPGVNQVNVND------RAGLTFPVALKAFLRQDPDIIMVGEIRDLETADIAIKAAQT 406 Query: 357 GHQIWTTLHANSALAIVDRLIDLGLQQSLVLDHTVITGLISQRLVKQLCPHCKRPLLAHL 416 GH +++TLH N A A + RL+++G+ + ++ + +QRL ++LC CK+ Sbjct: 407 GHMVFSTLHTNDAPATLTRLMNMGVAPFNIASSVIL--ITAQRLARRLC-SCKQ------ 457 Query: 417 DQVPAALLARLRQVIPDR------LQDVCISGP-------GCEFCSHRGTIGRTVVAEVI 463 VIPD + + G GCE CS G GR + +++ Sbjct: 458 -----------TTVIPDEALLEAGFSEEDLDGTWLPYKPVGCERCSGSGYKGRVGIYQIM 506 Query: 464 -VPDESFFRHLRMGEKCQAWRHWKESLGGRSIADHALDKVVAGL 506 + +E L G + K+ G R++ + L KV GL Sbjct: 507 PISEEIEGIILNHGTSMEIEAQAKKD-GVRTLRESGLVKVKLGL 549 >gi|152980378|ref|YP_001352030.1| PilT twitching motility protein [Janthinobacterium sp. Marseille] Length = 347 Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 144/286 (50%), Gaps = 24/286 (8%) Query: 121 EMLNKACRVRASDIHLRVRKNCTEIYFRIHNDLLPVGGQTREYGERLLATLYGAMTSVSD 180 E+L + + +ASD+HL R+H D+ + E+ + + +Y M Sbjct: 5 ELLAFSVKNKASDLHLSA---GLPPMIRVHGDVRRINLPPLEHKD-VHGMIYDIMNDGQR 60 Query: 181 SSYKPTERQDASIADRDKLPPELYGVRIATVPTNEGSLMVLRLLYNDVGENLDLGSLGFS 240 Y+ D S A P L R+ + G+ VLR + + + DL + Sbjct: 61 KVYEERLEIDFSFA-----IPGLARFRVNAFNQDRGAAAVLRTIPSKILSLEDLNAPKIF 115 Query: 241 AQQVSDLQRLKEQPIGMNIISGPTGSGKSTTLQRVLNGQILEGEGKLHVLTIEDPVEYPI 300 A L +P G+ +++GPTGSGKSTTL ++N + E E H+LTIEDP+E+ Sbjct: 116 AD-------LALKPRGLVLVTGPTGSGKSTTLAAMVN-HVNENE-YAHILTIEDPIEFVH 166 Query: 301 EGAVQTTITNAHTEEERSRLFSAAISNAMRLDPDTIMIGEIRDRASAQNALRASMTGHQI 360 + + + N + F A+ +A+R DPD +++GE+RD + + AL A+ TGH + Sbjct: 167 DS--KKCLINQREVGPHTHSFENALRSALREDPDVVLVGELRDLETIRLALSAAETGHLV 224 Query: 361 WTTLHANSALAIVDRLIDL--GLQQSLV--LDHTVITGLISQRLVK 402 + TLH +SA +DR+ID+ G ++ +V + + +ISQ L+K Sbjct: 225 FGTLHTSSAAKTIDRIIDVFPGDEKEMVRAMLSESLQAVISQTLLK 270 >gi|152982669|ref|YP_001353760.1| twitching motility protein PilU [Janthinobacterium sp. Marseille] Length = 374 Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 89/150 (59%), Gaps = 8/150 (5%) Query: 256 GMNIISGPTGSGKSTTLQRVLNGQILEGEGKLHVLTIEDPVEYPIEGAVQTTITNAHTEE 315 G+ ++ G TGSGKSTT+ +L+ + G H+LT+EDP+E+ + + +I N Sbjct: 124 GLLLVVGSTGSGKSTTIAAMLDHRNTIATG--HILTLEDPIEFLFKN--KKSIVNQREIG 179 Query: 316 ERSRLFSAAISNAMRLDPDTIMIGEIRDRASAQNALRASMTGHQIWTTLHANSALAIVDR 375 + A+ NA+R PD I+IGEIRD+ + AL + +GH + TLHAN++ + R Sbjct: 180 SDASDLPIALKNALRQAPDCILIGEIRDKETMSAALAYAQSGHLVVATLHANNSYQALTR 239 Query: 376 LID---LGLQQSLVLD-HTVITGLISQRLV 401 +I+ + +QSL+ D + + ++SQRL+ Sbjct: 240 IINFYPIENRQSLLADLSSTLRAIVSQRLI 269 >gi|152980677|ref|YP_001352029.1| PilU twitching motility protein [Janthinobacterium sp. Marseille] Length = 378 Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 8/150 (5%) Query: 256 GMNIISGPTGSGKSTTLQRVLNGQILEGEGKLHVLTIEDPVEYPIEGAVQTTITNAHTEE 315 G+ I+ G TGSGKSTTL ++ + G H++TIEDPVEY + IT Sbjct: 131 GLVIMVGATGSGKSTTLAAMIGHRNEHSFG--HIITIEDPVEY-VHPHKNCVITQREIGV 187 Query: 316 ERSRLFSAAISNAMRLDPDTIMIGEIRDRASAQNALRASMTGHQIWTTLHANSALAIVDR 375 + + A+ N +R PD I IGEIRDR + A+ + TGH T+HANS+ +DR Sbjct: 188 DTDG-WGVALKNTLRQAPDVIFIGEIRDRETMDYAIAFAETGHLCLATMHANSSNQALDR 246 Query: 376 LIDLGLQ---QSLVLDHTV-ITGLISQRLV 401 +++ + Q L++D ++ + +ISQRL+ Sbjct: 247 IVNFFPEERRQQLLMDLSLNLKAMISQRLI 276 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,208,864 Number of extensions: 48836 Number of successful extensions: 186 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 171 Number of HSP's successfully gapped: 5 Length of query: 539 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 451 Effective length of database: 895,685 Effective search space: 403953935 Effective search space used: 403953935 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)