BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2385.p (245 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981417|ref|YP_001351907.1| two-components system response ... 117 5e-28 gi|152983081|ref|YP_001353282.1| two-component response regulato... 105 2e-24 gi|152981484|ref|YP_001354521.1| two-components system response ... 102 2e-23 gi|152981323|ref|YP_001354612.1| two components system response ... 97 8e-22 gi|152981344|ref|YP_001351979.1| two-components system response ... 86 3e-18 >gi|152981417|ref|YP_001351907.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 117 bits (294), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 114/226 (50%), Gaps = 2/226 (0%) Query: 1 MKIACYLRNPAVYTQVKEALMRAGLEPVHFTTETDLLRALRRRGFSLIIIDITVAPGSDD 60 M+IA + + V + L AG F + +LL LRR F ++IID V S Sbjct: 1 MRIAVLDDDRSQTDLVCQVLSAAGHFCHPFQSGKELLNQLRRESFDMLIIDWQVPDLSGA 60 Query: 61 NIFSWLNYRSGDRTPTLVLSPTRSAELAALTLDSGADDFLVRPFEVIEFTARVNALIRRS 120 ++ W + P L ++ + L +GADD++++P E ARV AL+RR+ Sbjct: 61 DVLRWAREKLPTNLPVLFMTSRSGEDDIVAGLAAGADDYMIKPIRRGELLARVQALLRRA 120 Query: 121 APTASR-RTIEYAGFSLNRESTRFSYQGTPINLTPREFSMAWLFFSSPGVYISRDTIGAV 179 P+ + I++ F + R + G PI +T +EF +A LFF + G +SR I Sbjct: 121 YPSQNPIEQIQFGNFIFEARTGRLTMSGAPIEVTQKEFDLALLFFRNLGRPLSRAYILEA 180 Query: 180 IWSTDSDIAGRTIEQHVYKLRKKLQIDPNRPVVMIRTAYNQGYRLE 225 +W+ D +I RT++ HV ++R KLQ+ P + Y+ GYRLE Sbjct: 181 VWARDVEIPSRTMDTHVSRVRSKLQLRPEHGFRLA-PVYSYGYRLE 225 >gi|152983081|ref|YP_001353282.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 235 Score = 105 bits (263), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 117/235 (49%), Gaps = 10/235 (4%) Query: 1 MKIACYLRNPAVYTQVKEALMRAGLEPVHFTTETDLLRALRRRGFSLIIIDITVAPGSDD 60 M+I NP + + + AG E F T ++ AL + L+I++ + S Sbjct: 1 MRIVTLEDNPLESRAIHKVVTDAGHECTTFMTGKAMISALANDMYDLLILNWNLQDISGM 60 Query: 61 NIFSWLNYRSGDRTPTLVLSPTRSAELAALTLDSGADDFLVRPFEVIEFTARVNALIRRS 120 + W+ +G+ +VL+ + L +GADD + +PF E AR++AL +R Sbjct: 61 EVIRWVKESAGNDISVIVLADCAREDEIVEILMAGADDCIRKPFRDAELAARIHALTKRG 120 Query: 121 -------APTASRRT--IEYAGFSLNRESTRFSYQGTPINLTPREFSMAWLFFSSPGVYI 171 P+ +++ IE + + S +G I+L P+EF MA LFF + G+ I Sbjct: 121 RRPLTIEVPSTAQKVSKIEVGVYYFDLLRRTVSVRGEQIDLKPKEFDMAVLFFKNIGMQI 180 Query: 172 SRDTIGAVIWSTDSDIAGRTIEQHVYKLRKKLQIDPNRPVVMIRTAYNQGYRLEL 226 SR+ I A IW +DI R+++ H +LR KL+++ V +I + ++ GY+L + Sbjct: 181 SREQIMAEIWGRKTDIYSRSLDTHASQLRSKLRLNSENQVRLI-SIHSFGYQLNV 234 >gi|152981484|ref|YP_001354521.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 235 Score = 102 bits (255), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 14/236 (5%) Query: 1 MKIACYLRNPAVYTQVKEALMRAGLEPVHFTTETDLLRALRRRGFSLIIIDITVAPGSDD 60 M+IA +P + + + AG E F L+ AL+ + F ++++D V + Sbjct: 1 MRIASLEDDPIESQLIHQVITAAGHECTSFADGKSLITALQTQRFDILVLDWHVPDMTGK 60 Query: 61 NIFSWLNYRSGDRTPTLVLSPTRSAELAALTLDSGADDFLVRPFEVIEFTARVNALIRR- 119 ++ W+ G+ + L+ E L +GADD++ +P E +AR++AL +R Sbjct: 61 DVIEWVRGSIGENIIVMFLTNRVLEENIVAGLMAGADDYMTKPIREAELSARIHALSKRI 120 Query: 120 ----------SAPTASRRTIEYAGFSLNRESTRFSYQGTPINLTPREFSMAWLFFSSPGV 169 + P A+ + F L R+ + +G P++L P+EF +A LFF + G Sbjct: 121 RHVSENDAAVAVPQATAVEVGIFHFDLLRKIA--TIRGEPVDLKPKEFDIAALFFQNIGQ 178 Query: 170 YISRDTIGAVIWSTDSDIAGRTIEQHVYKLRKKLQIDPNRPVVMIRTAYNQGYRLE 225 ISR+ I +W + + RT++ H+ ++R KLQ+ + V + T Y GYRL+ Sbjct: 179 LISRERIMEEVWGRELMMTSRTLDTHMSQVRTKLQLKLDNN-VRLTTVYTIGYRLD 233 >gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 97.4 bits (241), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 6/231 (2%) Query: 1 MKIACYLRNPAVYTQVKEALMRAGLEPVHFTTETDLLRALRRRGFSLIIIDITVAPGSDD 60 M+I + + + AL +AG H D RAL ++L+++DI++ Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGL 60 Query: 61 NIFSWLNYRSGDRTPTLVLSPTRSAELAALTLDSGADDFLVRPFEVIEFTARVNALIRRS 120 + L R R P L+L+ + + LD GADD++ +PF++ EF ARV ALIRR Sbjct: 61 AVLRRLRERKS-RLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRG 119 Query: 121 APTASRRTIEYAGFSLNRESTRFSYQGTPINLTPREFSMAWLFFSSPGVYISRDTIGAVI 180 A + + + G + E+ R Y P+ L+ RE ++ + S G ++++ + + Sbjct: 120 QFDAG-KMLTHGGLRFDLEAHRLFYNDQPVELSVRELAVFEVLLSRQGQVVTKEQMIDRL 178 Query: 181 WSTDSDIAGRTIEQHVYKLRKKLQIDPNRPVVMIRTAYNQGYRLELCKEAS 231 + D IE +V++ RKKL+ P + IRT GY LE EA Sbjct: 179 FGWGDDGGSNAIEVYVHRTRKKLE--PYN--INIRTVRGMGYLLEKSGEAE 225 >gi|152981344|ref|YP_001351979.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 85.5 bits (210), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 10/199 (5%) Query: 45 FSLIIIDITVAPGSDD-NIFSWLNYRSGDRTPTLVLSPTRSAELAALTLDSGADDFLVRP 103 + +II+D + G D +I + L G RTP L+LS + + L +G +D+L +P Sbjct: 46 WDVIILDRMLPQGMDGLSILAALR-EMGKRTPVLILSALSAIDERVRGLQAGCNDYLTKP 104 Query: 104 FEVIEFTARVNALIRRSAPTASRRTIEYAGFSLNRESTRFSYQGTPINLTPREFSMAWLF 163 F E ARV AL+R + P R + +N + G P++L PREF + Sbjct: 105 FAFPELAARVEALLRWTQPNEVIRELCVEDLKVNLLTRSVERGGRPLSLQPREFRLLVYM 164 Query: 164 FSSPGVYISRDTIGAVIWSTDSDIAGRTIEQHVYKLRKKLQIDPNRPVVMIRTAYNQGYR 223 + G ++R + +W+ D I+ H+ +LR K +D V +I T N GY Sbjct: 165 MTHKGQVLTRTMLLESVWNYQFDPQTNVIDAHISRLRNK--VDKGFAVPLIHTRRNLGYI 222 Query: 224 LELCKEASPTSDTADPDDY 242 L +P T DD+ Sbjct: 223 L------TPNPQTEPADDH 235 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 572,538 Number of extensions: 21968 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 88 Number of HSP's successfully gapped: 20 Length of query: 245 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 164 Effective length of database: 921,564 Effective search space: 151136496 Effective search space used: 151136496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)