BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2380.p (536 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 441 e-125 gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis pro... 419 e-118 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 404 e-114 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 389 e-109 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 369 e-103 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 441 bits (1133), Expect = e-125, Method: Compositional matrix adjust. Identities = 245/525 (46%), Positives = 349/525 (66%), Gaps = 3/525 (0%) Query: 1 MFTHLKIAKRLGLGLGLVLVLSCMTTGVALWNLQTLSDASSAMMKKPLMKERLSSDWYRA 60 F+++KI RL LG G+VL LS + L +S + +M++ P+ KER+ SDW Sbjct: 3 FFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWAAI 62 Query: 61 IDSGIMRTTAIAKSSDPSLTAF---LATEGPKKSGDLQEHIGSLLDSDEERALFDKIGVQ 117 + I RT +AKS+DP+L F A + K+S ++ + + LL++D+E+ L+ KI Sbjct: 63 TKASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKILDV 122 Query: 118 RKRYLAARDQVNQLKAAGETAQALKLLEEQYVPVAKGFQQLMQEFLNVQRHQIDSINLQI 177 RK +LA R+ V +LK G+ A+A K + ++P A F+ EF+ ++R Q+D+ Q+ Sbjct: 123 RKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTAQL 182 Query: 178 ERTAGQSRRLLLILEGLSVLLAAIVVHLLARSIIRPLTEAVSVAQRVARGDLTAELQVGA 237 S R L++L + + L I RPL AV A+RVA GDLT +++ + Sbjct: 183 SDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIKAES 242 Query: 238 RDEVGQLMQSLRSMTLNLRELIGKLRRSIHGIAIASAEIATGNQDLSVRTEQQASSVEET 297 +DE GQL+ +L+ M L+ ++G++R I AS EIA GN DLS RTEQQASS+EET Sbjct: 243 KDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEET 302 Query: 298 AAAMEQIATTVKRNAEHARRADETTAVASSAASAGGDAVARMIQTMETINRSSQKISSII 357 A++ME++ +TVK+NA++AR+A++ AS A GGD V++++QTM +IN SS+KI II Sbjct: 303 ASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDII 362 Query: 358 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELITDSV 417 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LI DSV Sbjct: 363 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSV 422 Query: 418 DKVNAGTALVQEAGKTIHGIVESVESVAAIIGDISSSGQDQANGISEVSHAINLIDDVTQ 477 KV+ G LV EAG T+ IV S+ V I+G+I+++ Q+Q+ GI +++ AI +D VTQ Sbjct: 423 GKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQ 482 Query: 478 KNAALVEQAMAAACAMKDEARNLADLISIFKLEGAPETPALTATG 522 +NA+LVE+A AAA +M+D+AR L ++ FKL+ A E A+G Sbjct: 483 QNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNAQEANPPRASG 527 >gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 549 Score = 419 bits (1077), Expect = e-118, Method: Compositional matrix adjust. Identities = 251/540 (46%), Positives = 357/540 (66%), Gaps = 6/540 (1%) Query: 1 MFTHLKIAKRLGLGLGLVLVLSCMTTGVALWNLQTLSDASSAMMKKPLMKERLSSDWYRA 60 ++ +I RL +G LVL LS +T +AL + + ++A+ MM+KPL KER++SDWY Sbjct: 3 FLSNFRIGTRLAIGFILVLALSVASTAIALIHARQNAEATRLMMEKPLAKERITSDWYVF 62 Query: 61 IDSGIMRTTAIAKSSDPSLTAFLA---TEGPKKSGDLQEHIGSLLDSDEERALFDKIGVQ 117 I S I RT+ IA+S+D +L+ A + K+ L + + ++ SD ER L+ + Sbjct: 63 IYSAIARTSMIARSTDDTLSDVFADVIADSTKQGSALLKSLEGMITSDAERKLYQQTIEL 122 Query: 118 RKRYLAARDQVNQLKAAGETAQALKLLEEQYVPVAKGFQQLMQEFLNVQRHQIDSINLQI 177 RK Y ++ V K G A+A + + ++P AK +Q+ + EFL+VQR ID I+ I Sbjct: 123 RKAYQKGKEDVMNAKKGGNKAEAERAYLQIFLPAAKAYQEKVLEFLSVQRKAIDQISRDI 182 Query: 178 ERTAGQSRRLLLILEGLSVLLAAIVVHLLARSIIRPLTEAVSVAQRVARGDLTAELQVGA 237 + +S L++ L L +LL A ++ RSI +PL A+ VA R A GDLT ++ + Sbjct: 183 DDAHQRSLNLMIGLGVLLILLGAACAIVITRSITKPLRSAIDVASRAADGDLTGDIGKPS 242 Query: 238 RDEVGQLMQSLRSMTLNLRELIGKLRRSIHGIAIASAEIATGNQDLSVRTEQQASSVEET 297 +DE+G LM++L M L++++ ++ I ASAEIA GN DLS RTEQQA+S+EET Sbjct: 243 KDEIGDLMRALGGMNDGLKKIVNDVKAGTDFINTASAEIAHGNLDLSSRTEQQAASLEET 302 Query: 298 AAAMEQIATTVKRNAEHARRADETTAVASSAASAGGDAVARMIQTMETINRSSQKISSII 357 A++ME++ +TVK+NAE+A++A++ AS A+ GG V MI TM IN SS+KI II Sbjct: 303 ASSMEELTSTVKQNAENAQQANQLAVSASDVAAKGGAVVKEMISTMGAINSSSRKIVDII 362 Query: 358 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELITDSV 417 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK LI DSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKSLIGDSV 422 Query: 418 DKVNAGTALVQEAGKTIHGIVESVESVAAIIGDISSSGQDQANGISEVSHAINLIDDVTQ 477 V+AG+ LV EAGKT+ +V S+ V I+ +I ++ Q+Q++GI +V+ AI+ +D VTQ Sbjct: 423 SNVDAGSKLVSEAGKTMDDVVNSIRHVTDIMNEIMAASQEQSSGIEQVNTAISQMDQVTQ 482 Query: 478 KNAALVEQAMAAACAMKDEARNLADLISIFKL-EGAPETPALTATGSHPTTH--ALALPL 534 +NAALVE+A AA+ +++D+A LA ++++FKL E P + T H H +LP Sbjct: 483 QNAALVEEAAAASQSLRDQADKLAQIVNVFKLDERQPASAQAVRTEHHSLAHDAHTSLPF 542 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 404 bits (1039), Expect = e-114, Method: Compositional matrix adjust. Identities = 245/523 (46%), Positives = 342/523 (65%), Gaps = 5/523 (0%) Query: 2 FTHLKIAKRLGLGLGLVLVLSCMTTGVALWNLQTLSDASSAMMKKPLMKERLSSDWYRAI 61 T+LKI+ RL G L+L L M T V + LQ + ++ M + L KERL+ +W A+ Sbjct: 3 ITNLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAV 62 Query: 62 DSGIMRTTAIAKSSDPSLTAFLATEGPKKS---GDLQEHIGSLLDSDEERALFDKIGVQR 118 D RT A AK++ AF + K S +LQ+ I S++ + E++ LF+++ V R Sbjct: 63 DVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEELVVAR 122 Query: 119 KRYLAARDQVNQLKAAGETAQALKLLEEQYVPVAKGFQQLMQEFLNVQRHQIDSINLQIE 178 Y R V +LKA G+ +A L+ E+ +P + + L ++ ID I+ Sbjct: 123 NAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAGTSIQ 182 Query: 179 RTAGQSRRLLLILEGLSVLLAAIVVHLLARSIIRPLTEAVSVAQRVARGDLTAELQVGAR 238 R LL+ L +V L LA SI RPL AV+VA+ VA GDL+A+++V + Sbjct: 183 SAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAKIEVSSN 242 Query: 239 DEVGQLMQSLRSMTLNLRELIGKLRRSIHGIAIASAEIATGNQDLSVRTEQQASSVEETA 298 DE GQLMQ+L+ MT +L + + ++R IA AS +IA+GN DLS RTE+QASS+ ETA Sbjct: 243 DETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSLGETA 302 Query: 299 AAMEQIATTVKRNAEHARRADETTAVASSAASAGGDAVARMIQTMETINRSSQKISSIIG 358 A+M Q+ +TV++NA++AR+A+ AS A GG V+ ++ TM +IN S++KI II Sbjct: 303 ASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKIVDIIS 362 Query: 359 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELITDSVD 418 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK LI DSV Sbjct: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIGDSVG 422 Query: 419 KVNAGTALVQEAGKTIHGIVESVESVAAIIGDISSSGQDQANGISEVSHAINLIDDVTQK 478 KV AG+ LV EAG T++ IV+SV+ V I+ +I ++ Q+Q++GI +V+ AI +D VTQ+ Sbjct: 423 KVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQVTQQ 482 Query: 479 NAALVEQAMAAACAMKDEARNLADLISIFKLEGAPETPALTAT 521 NAALVE+A AAA +++D+A NLA ++S FKL+G PA ++ Sbjct: 483 NAALVEEAAAAAESLQDQAGNLARVVSQFKLDG--NQPAFVSS 523 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 389 bits (998), Expect = e-109, Method: Compositional matrix adjust. Identities = 245/548 (44%), Positives = 351/548 (64%), Gaps = 16/548 (2%) Query: 2 FTHLKIAKRLGLGLGLVLVLSCMTTGVALWNLQTLSDASSAMMKKPLMKERLSSDWYRAI 61 ++LKI RLGL ++L+L V +W LQ ++ A+ M++ KERL+ +WY Sbjct: 3 ISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQAT-VHMEEAAHKERLTHEWYLGN 61 Query: 62 DSGIMRTTAIAKSSDPSLTAFLATEGPKKSGD---LQEHIGSLLDSDEERALFDKIGVQR 118 + +RT A +S+D + E +S + LQ I +L+ S+E + L +G +R Sbjct: 62 VANAIRTAARIRSNDAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGKKLMSVVGEKR 121 Query: 119 KRYLAARDQVNQLKAAGETAQAL---KLLEEQYVPVAKGFQQLMQEFLNVQRHQIDSINL 175 Y+ R V +LKA A L KL+E + P + + +Q ++ Q+ Sbjct: 122 TAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSFQQVIFQRAKA 181 Query: 176 QIERTAGQSRRLLLILEGLSVLLAAIVVHLLARSIIRPLTEAVSVAQRVARGDLTAELQV 235 ++ R +L+ L ++++L+A + LL+RSI RPL AVSVA+ VA GDL ++Q Sbjct: 182 DVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAVSVARTVASGDLRNKIQS 241 Query: 236 GARDEVGQLMQSLRSMTLNLRELIGKLRRSIHGIAIASAEIATGNQDLSVRTEQQASSVE 295 + DE GQL+++LR M L + + ++R I IA AS +IA GN DLS RTE+QASS+E Sbjct: 242 SSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEEQASSLE 301 Query: 296 ETAAAMEQIATTVKRNAEHARRADETTAVASSAASAGGDAVARMIQTMETINRSSQKISS 355 ETA++ME++ +TVK+NA++AR+A++ AS A GG+ V+R++ TME IN S++KI Sbjct: 302 ETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINASAKKIVD 361 Query: 356 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELITD 415 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK LI D Sbjct: 362 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGD 421 Query: 416 SVDKVNAGTALVQEAGKTIHGIVESVESVAAIIGDISSSGQDQANGISEVSHAINLIDDV 475 SVDKV G+ LV EAG T+ +V+SV+ V I+ +I ++ Q+Q+ GI +V+ AI +D V Sbjct: 422 SVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQV 481 Query: 476 TQKNAALVEQAMAAACAMKDEARNLADLISIFKLE-----GAPETPALTAT--GSH--PT 526 TQ+NAALVE+A AAA ++ ++A LA+ +S+FKL+ AP T SH P Sbjct: 482 TQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKLDSITAAAAPSKKVNVGTRVASHGAPA 541 Query: 527 THALALPL 534 A+A+P+ Sbjct: 542 NRAIAVPV 549 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust. Identities = 235/537 (43%), Positives = 337/537 (62%), Gaps = 5/537 (0%) Query: 1 MFTHLKIAKRLGLGLGLVLVLSCMTTGVALWNLQTLSDASSAMMKKPLMKERLSSDWYRA 60 M ++KI ++L L G+V L + T ++ L L+++ + K K L++ Sbjct: 3 MIANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIE 62 Query: 61 IDSGIMRTTAIAKSSDPSLTAFLATE---GPKKSGDLQEHIGSLLDSDEERALFDKIGVQ 117 ++ + I SSDP+ L ++ KK + E + ++ ++E+ V Sbjct: 63 VNKIALNLRDIMLSSDPAKIKQLVSDTQASDKKMNEGLEQLRAVAQTEEDNRYVSAAIVA 122 Query: 118 RKRYLAARDQVNQLKAAGETAQALKLLEEQYVPVAKGFQQLMQEFLNVQRHQIDSINLQI 177 R +Y+ ARD + QL G+TA+A L++ ++PV + + + Q ++ Sbjct: 123 RDQYVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMNVAGDAA 182 Query: 178 ERTAGQSRRLLLILEGLSVLLAAIVVHLLARSIIRPLTEAVSVAQRVARGDLTAELQVGA 237 T+ Q+R ++ IL G+S+LL+ V + RSI RPL AV VA+RVA+GDL+ + V Sbjct: 183 SATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVAQGDLSGPVFVKT 242 Query: 238 RDEVGQLMQSLRSMTLNLRELIGKLRRSIHGIAIASAEIATGNQDLSVRTEQQASSVEET 297 +EVGQLM +L++M NL ++ ++R IA AS EIA GN DLS RTEQQASS+EET Sbjct: 243 TNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASSLEET 302 Query: 298 AAAMEQIATTVKRNAEHARRADETTAVASSAASAGGDAVARMIQTMETINRSSQKISSII 357 A+AME++ +TV+ NA++A++A++ A A+ A GG V +I TM IN SS+KI+ I Sbjct: 303 ASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKIADIT 362 Query: 358 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELITDSV 417 GVID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA EIK LI DSV Sbjct: 363 GVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKALIDDSV 422 Query: 418 DKVNAGTALVQEAGKTIHGIVESVESVAAIIGDISSSGQDQANGISEVSHAINLIDDVTQ 477 KV+ G+ LVQ+AG TI +V SV S++ I+ IS++ Q+Q+ GI +V AI ID+ TQ Sbjct: 423 AKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQIDEGTQ 482 Query: 478 KNAALVEQAMAAACAMKDEARNLADLISIFKLE-GAPETPALTATGS-HPTTHALAL 532 +NAALVEQ+ AAA +++++A L L+SIFKL+ + T A A G H T + AL Sbjct: 483 QNAALVEQSAAAAQSLREQADQLMQLVSIFKLDRQSVATSAAPAAGKLHLVTTSTAL 539 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.127 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 857,113 Number of extensions: 26881 Number of successful extensions: 247 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 161 Number of HSP's successfully gapped: 21 Length of query: 536 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 448 Effective length of database: 895,685 Effective search space: 401266880 Effective search space used: 401266880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)