BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2375.p
         (251 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980741|ref|YP_001353195.1| GntR family transcriptional reg...    91   5e-20
gi|152981522|ref|YP_001352980.1| GntR family transcriptional reg...    80   2e-16

>gi|152980741|ref|YP_001353195.1| GntR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 284

 Score = 91.3 bits (225), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 118/237 (49%), Gaps = 11/237 (4%)

Query: 13  PRYRWLADIIRDTIDRGLFTDNQALPPERELAEHYEVSRDTVRKALRYMEERGIIYSDHG 72
           P Y+ +  +I  ++  G +   + +P E ELA  ++VS+ TVRKA+  +    ++    G
Sbjct: 52  PLYQQIKALITRSLQSGEWRPGELIPSEVELATRFKVSQGTVRKAIDELSAENLVVRRQG 111

Query: 73  RGTFVSPAI-VRGTTRFIDSFSQDTGNRGGVPGQRIISIENVGASMAIATLLNIESGTPL 131
           +GTFV+     R   RF+     D G     P   II  + + A   IA  L+I++G  +
Sbjct: 112 KGTFVATHHEARAQFRFL-RLKPDVG-EPLYPDNTIIDAKRLRAPADIARQLDIKTGDSV 169

Query: 132 VRVRRVRLIDDAPVGVHDAHLVLPRGSRLTRSQIER----SGSLYKLLTAQYGFDPAEAV 187
           V ++RV+  D AP  + +  L LP G+      +ER     G +Y LL  ++G     AV
Sbjct: 170 VFLKRVQSFDGAPTILEE--LWLP-GTIFKGLSVERVLQYKGPMYALLETEFGTQMIRAV 226

Query: 188 ENLCAGAADADDAQWLDVPVAAPLLICERITLSDRRQPIEYCLMKYVS-SYRYRTRI 243
           EN+ A  AD   A  L +P+  PLL   R++ +   +P+E     YV+ ++ YR  +
Sbjct: 227 ENIKAVVADQVTADLLSLPLNTPLLSVTRVSFTYGDKPVEVRRSYYVTNNHHYRNEL 283


>gi|152981522|ref|YP_001352980.1| GntR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 245

 Score = 79.7 bits (195), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 98/212 (46%), Gaps = 7/212 (3%)

Query: 31  FTDNQALPPERELAEHYEVSRDTVRKALRYMEERGIIYSDHGRGTFVSPAIVRG--TTRF 88
           +T   A+P E++L + + VS  T+RKA+  +    I+    GRGTFV+    RG    RF
Sbjct: 31  WTSGDAIPSEKQLCQRFGVSIGTLRKAIDELVAENILIRHQGRGTFVA-VHNRGPHLFRF 89

Query: 89  IDSFSQDTGNRGGVPGQRIISIENVGASMAIATLLNIESGTPLVRVRRVRLIDDAPVGVH 148
            +    D   +   P   + S     A    A  L I  G+ + +   VR ++D  V V 
Sbjct: 90  FNVVRHD--GQKSYPQLTLNSFVKTSADELAAEKLGIAVGSKVFQFVNVRSLNDEAVLVD 147

Query: 149 DAHLVLPRGSRLTRSQI-ERSGSLYKLLTAQYGFDPAEAVENLCAGAADADDAQWLDVPV 207
           +  L       +T +Q+ ER  +LY L    YG +     E + A  A A  A+ L++  
Sbjct: 148 EITLPEELFPGMTEAQLRERPSTLYNLYQVSYGINVIRIEERVRASLASAAHAKLLNIAT 207

Query: 208 AAPLLICERITLSDRRQPIEYCLMKYVSSYRY 239
            APLL   R+  S   QPIE+    YV++ RY
Sbjct: 208 GAPLLKIYRVAFSYNNQPIEF-RTSYVNTERY 238


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 599,476
Number of extensions: 24677
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 251
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 170
Effective length of database: 921,564
Effective search space: 156665880
Effective search space used: 156665880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)