BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2374.p
         (370 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981085|ref|YP_001353362.1| ABC-type transport system, peri...    64   1e-11
gi|152981540|ref|YP_001355255.1| ABC-type transport system, peri...    59   5e-10

>gi|152981085|ref|YP_001353362.1| ABC-type transport system,
           periplasmic component/surface lipoprotein
           [Janthinobacterium sp. Marseille]
          Length = 366

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 19/216 (8%)

Query: 62  ARGMRRAGHELPVSVRVVEGGNDPTRWESGLSDLADSGDYDIVLAGTYTMVPYVQRLAAE 121
           AR    A     + V  VEG +     E    DLA  G+  ++   +++ +  + ++A  
Sbjct: 57  ARQAMEAAFPGKIKVVKVEGVSQAQDAERVFRDLAVQGN-KLIFGTSFSHMTPMLKVAQS 115

Query: 122 FPRTRFVMFDATVDYAHCACGNVHSILFRQNEGAYLAGYLAAMLLQAHLLPGVPPNAGLG 181
            P+T F +             N+ +   R  EG YLAG +A  + ++++L         G
Sbjct: 116 MPKTTFELCSGI-----KTLKNMGAFEARYYEGTYLAGIVAGKMSKSNVL---------G 161

Query: 182 LVGGMQLPVIDDYLLGFGAGARAANPSVRMAVQYANGFSDPAAGKDIANAQIAAGAGVIF 241
            +GG  +P I      F  GAR+ NP V   V + + + DPA  +D ANA I+ GA V+ 
Sbjct: 162 FIGGFPVPDILGPANAFLLGARSVNPKVTCKVIWLSSWYDPAKERDAANALISEGADVV- 220

Query: 242 QAAGATGQGVTEAASEAHRYTVGV--DLDQYEMYRH 275
            ++        +   E   +TVG   D+ +Y   +H
Sbjct: 221 -SSMTDTPTTIQVGEEKGVWTVGYASDMSKYGPKKH 255


>gi|152981540|ref|YP_001355255.1| ABC-type transport system,
           periplasmic component/surface lipoprotein
           [Janthinobacterium sp. Marseille]
          Length = 329

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 136/325 (41%), Gaps = 44/325 (13%)

Query: 46  LFINGTLGDRSFFDSAARGMRRA----GHELPVS-VRVVEGGNDPTRWESGLSDLADSGD 100
           + + G+  D  + +SA  G++RA    G ++ +S +  V+ G+     E  L  LA   D
Sbjct: 39  ILMPGSKLDHGWMESAYNGIKRAEARYGSKVKISFIENVKFGD----MEQVLVSLASKND 94

Query: 101 YDIVLAGTYTMVPYVQRLAAEFPRTRFVMFDATVDYAHCACGNVHSILFRQNEGAYLAGY 160
             I  AG       V ++A  FP+ +F +   T         NV      Q +  ++AG 
Sbjct: 95  LVIGAAGQTQAS--VLKVAQRFPKVKFSIVGPT----GTPTSNVAQYDVLQAQIGFIAGA 148

Query: 161 LAAMLLQAHLLPGVPPNAGLGLVGGMQLPVIDDYLLGFGAGARAANPSVRMAVQYANGFS 220
           +AAM  +         N  +  VGG ++P I +    FG GAR   P ++    Y   F 
Sbjct: 149 VAAMSSK---------NGAVSYVGGAEIPAIVNTGKEFGNGARYVKPDIKYFETYTGDFD 199

Query: 221 DPAAGKDIANAQIAAGAGVIFQAAGATGQGVTEAASEAHRYTVGVDLDQYEMY-RHSNPQ 279
           D    K+   A I  GA V +       +G+ +AA + +   +G     Y  Y    NP 
Sbjct: 200 DVTKAKEATLAAIGQGADVHYNILNLGVRGMEQAARDKNTRMIG----SYTNYCADKNPL 255

Query: 280 RAAAIITSVLKNVDVAIVQALTLALRQQL-PYGRADSLGLAEGGIGMAPHS---EVLDRL 335
             A  ++ +   ++ AI Q +    + +  P+G A           M P S   EV   +
Sbjct: 256 YLAYTVSGIGFMLEYAIDQMVAGTWKPEYKPFGLA-----------MGPQSAGIEVCGGM 304

Query: 336 PVPLRQRLDAVRADLVSGRVRLPSG 360
              ++ ++  ++  L++G++++  G
Sbjct: 305 TPQMQAKVREIQDALLAGKIKVRVG 329


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 844,416
Number of extensions: 37136
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 2
Length of query: 370
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 285
Effective length of database: 906,776
Effective search space: 258431160
Effective search space used: 258431160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)