BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2373.p (531 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATP... 322 2e-89 gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transp... 291 7e-80 gi|152980457|ref|YP_001355073.1| ABC-2 type transport system ATP... 105 5e-24 gi|152981150|ref|YP_001353311.1| ABC-type multidrug transport sy... 105 6e-24 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 103 2e-23 >gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 511 Score = 322 bits (826), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 192/500 (38%), Positives = 299/500 (59%), Gaps = 13/500 (2%) Query: 14 LELRDVSKLYPNGTLANDNVNLSIRAGEIHAILGENGAGKSTVMKMLYGLEQPSCGNIWL 73 LEL ++K YP+ +AND +NLS++ GEIHA+LGENGAGKST+MK++YG +P G + Sbjct: 5 LELHSITKRYPS-VVANDGINLSVKPGEIHAVLGENGAGKSTLMKIIYGSVKPDAGKVLW 63 Query: 74 DGQPRVLPDPAHAIAAGIGLVPQHLHLLPSFSVTDNIVLGAEPRRGWRIDRKAALQRVQS 133 +G+ + +PA A GI +V QH L + +V +NI LG ++D A +R+ Sbjct: 64 NGKEVHIANPAMARELGIAMVFQHFSLFDTLTVVENIALGLP--HDTKLDELA--RRISD 119 Query: 134 LVQRFGLDVDPLARVRDLPVGVQQRVGILKALYRGARVLLLDEPSAVLSAQEAMTLFQVL 193 +++GL+++P V L VG QRV I++AL ++L+LDEP++VL+ Q LF+ L Sbjct: 120 TAEQYGLELEPQRHVHTLSVGECQRVEIVRALLAKPQLLILDEPTSVLTPQAVEKLFETL 179 Query: 194 RGMVAQGLTVVLISHKLKEIRDVADRFTVLRKGRVSGSGLVRDFSETELGSMIVSTAPPP 253 R + A+G +++ ISHKL EIR + D TV+R G+ +G R+ S L M++ PPP Sbjct: 180 RKLAAEGCSILYISHKLDEIRALCDTCTVVRAGKNTGICDPREESAASLSRMMIGCEPPP 239 Query: 254 MPARNRKRATCPLLEVRDLE-ARHGDGRLALRSLSLDIAAGEILGIAGVEGNGQDVLARV 312 + R LL V++L ++ L ++ ++ AGEILGIAGV GNGQ L Sbjct: 240 IKHVLRSPGQT-LLAVKNLSLKKNHPFATELSDINFELRAGEILGIAGVSGNGQQELLAA 298 Query: 313 LLGLQAASRGEGR---LQGLRFTGLSVRQVRACGVAYIAEDRMHDGVAAEMSIADNLIAV 369 L G R E + LQG R + Q R G+ ++ E+R+ G +MS+ADN++ + Sbjct: 299 LSG--EDPRAEAQMILLQGERVGHFNPAQRRERGLGFVPEERLGRGAVPDMSLADNIL-L 355 Query: 370 TYHKAPFSRYGWLDSTAIGRAATALMQRCGIVAPSPATLIGALSGGNMQKLVLGREVAAG 429 ++ G++ AI + AT +++R + A P +LSGGN+QK ++GREV Sbjct: 356 SHQTGATISSGFIRKHAIVKMATDVIERFVVKAGGPHAAARSLSGGNLQKYIVGREVMRN 415 Query: 430 PRLLIASQPTRGVDIGAARALHDQLLALCEQGAAILLISADLDELLSLSDRVAVMADGAL 489 P++LI +QPT GVD+GAA + +L+AL + G A+L+IS +LDEL +SDR+ V+A G L Sbjct: 416 PKVLIVAQPTWGVDVGAAAQIRAELVALRDAGCALLVISEELDELFEISDRLMVIAKGRL 475 Query: 490 VAHFDAAGLGADVLGPYLTG 509 ++ D++G +++G Sbjct: 476 SPSIASSAATIDLIGQWMSG 495 >gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 523 Score = 291 bits (745), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 193/525 (36%), Positives = 293/525 (55%), Gaps = 33/525 (6%) Query: 12 ALLELRDVSKLYPNGTLANDNVNLSIRAGEIHAILGENGAGKSTVMKMLYGLEQPSCGNI 71 A+LE+ V+K + + + ND ++L++ AGE+H +LGENGAGKST+ +++G+ +P G I Sbjct: 2 AILEIAGVTKRFGSHLVLND-ISLNVEAGEVHCLLGENGAGKSTLCNLIFGVHRPDAGLI 60 Query: 72 WLDGQPRVLPDPAHAIAAGIGLVPQHLHLLPSFSVTDNIVLGAEPRRGWRIDRKAALQRV 131 DG PAHA+ GI +V QH L+ + SV +N++LG R + + ++R+ Sbjct: 61 KYDGGEFRPSGPAHALELGIAMVHQHFSLVSNMSVVENLMLG---RAQAILKQDFIIRRM 117 Query: 132 QSLVQRFGLDVDPLARVRDLPVGVQQRVGILKALYRGARVLLLDEPSAVLSAQEAMTLFQ 191 Q L + L +DP V DL VG +QR+ I+K L R+LLLDEP+AVL +E +L Sbjct: 118 QELADEYDLKIDPHCIVGDLSVGERQRIEIIKCLLSNPRLLLLDEPTAVLPPEEVDSLLA 177 Query: 192 VLRGMVAQGLTVVLISHKLKEIRDVADRFTVLRKGRVSGS---------GLVRDFSETEL 242 V R + G V+L++HKL EI VADR +VLR+GR+ S LVR ++ Sbjct: 178 VCRKVAESGRGVILVTHKLAEIAKVADRTSVLRQGRIVESVCMEGADMHALVRSMVGRDV 237 Query: 243 GS---------MIVSTAPPPMPAR--------NRKRATCPLLEVRDLEARHGDGRLALRS 285 S I+S A + + P L+++ L + DG L Sbjct: 238 KSGDSVLAATLGILSDAAQDAANATPAAAAVVDSRSLGLPALQLQGLSFQDKDGVTRLSD 297 Query: 286 LSLDIAAGEILGIAGVEGNGQDVLARVLLGLQAASRGEGRLQGLRFTGLSVRQVRACGVA 345 + L +A GEI+GIAGVEGNGQ L ++ GL + G ++ TG S + + G Sbjct: 298 VHLSVARGEIVGIAGVEGNGQSELGAIIAGLLTPTGGAMKIGEQDLTGSSAQDITDAGAG 357 Query: 346 YIAEDRMHDGVAAEMSIADNLIAVTYHKAPFSRYGWLDSTAIGRAATALMQRCGIVAPSP 405 I EDR +E+S+A+NL + K FSR+G LD + + A +M + A SP Sbjct: 358 IIPEDRHAVACISELSVAENLFLGSLEK--FSRFGLLDREKMAKQAATMMTEFDVRATSP 415 Query: 406 ATLIGALSGGNMQKLVLGREVAAGPRL-LIASQPTRGVDIGAARALHDQLLALCEQGAAI 464 + +LSGGN QK VL RE++ P + L+A+QPTRG+D+GA A+ +++ G + Sbjct: 416 NAPMSSLSGGNQQKAVLARELSLDPLIFLLAAQPTRGLDVGAVEAVFNRIRTAASNGLGV 475 Query: 465 LLISADLDELLSLSDRVAVMADGALVAHFDAAGLGADVLGPYLTG 509 LLIS+DL+EL+++SDRVAV+ GA+V A + +G ++G Sbjct: 476 LLISSDLNELIAVSDRVAVLYRGAIVGELPADPANREKIGAMMSG 520 >gi|152980457|ref|YP_001355073.1| ABC-2 type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 310 Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 128/240 (53%), Gaps = 8/240 (3%) Query: 12 ALLELRDVSKLYP---NGTLANDNVNLSIRAGEIHAILGENGAGKSTVMKMLYGLEQPSC 68 A+L + D+ K + +GT D ++ ++R GE + +LG NGAGK+T +++ GL P Sbjct: 5 AILAVADLHKSFGRNGSGTKVIDGLSFALRRGECYGLLGPNGAGKTTTLRLCLGLTAPDS 64 Query: 69 GNIWLDGQPRVLPDPAHAIAAGIGLVPQHLHLLPSFSVTDNIVLGAEPRRGWRIDRKAAL 128 G+I L +P A A +G+VPQ +L P F+V +N+++ R + I K Sbjct: 65 GSITLVDH--AIPAHAREARARVGVVPQGDNLDPDFTVEENLLVFG---RYFGIPDKTIQ 119 Query: 129 QRVQSLVQRFGLDVDPLARVRDLPVGVQQRVGILKALYRGARVLLLDEPSAVLSAQEAMT 188 R+ SL++ L A++ +L G+++R+ + +AL ++ +DEP+ L Q Sbjct: 120 ARIPSLLEFANLTNKKDAQIGELSGGMRRRLTLARALVNDPDLIFMDEPTTGLDPQARHM 179 Query: 189 LFQVLRGMVAQGLTVVLISHKLKEIRDVADRFTVLRKGRVSGSGLVRDFSETELGSMIVS 248 +++ L+ ++A+G T+ L +H + E + DR V+ G++ G R+ + S ++ Sbjct: 180 IWERLKALLARGKTIFLTTHFMDEAERLCDRLAVMDYGKLIAEGSPRELIAQHIESQVLE 239 Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 99/230 (43%), Gaps = 16/230 (6%) Query: 266 LLEVRDLE---ARHGDGRLALRSLSLDIAAGEILGIAGVEGNGQDVLARVLLGLQAASRG 322 +L V DL R+G G + LS + GE G+ G G G+ R+ LGL A G Sbjct: 6 ILAVADLHKSFGRNGSGTKVIDGLSFALRRGECYGLLGPNGAGKTTTLRLCLGLTAPDSG 65 Query: 323 EGRLQGLRFTGLSVRQVRACGVAYIAEDRMHDGVAAEMSIADNLIAVTYHKAPFSRYGWL 382 S+ V A+ E R GV + D V + F RY + Sbjct: 66 ------------SITLVDHAIPAHAREARARVGVVPQGDNLDPDFTVEENLLVFGRYFGI 113 Query: 383 DSTAIGRAATALMQRCGIVAPSPATLIGALSGGNMQKLVLGREVAAGPRLLIASQPTRGV 442 I +L++ + A IG LSGG ++L L R + P L+ +PT G+ Sbjct: 114 PDKTIQARIPSLLEFANLTNKKDAQ-IGELSGGMRRRLTLARALVNDPDLIFMDEPTTGL 172 Query: 443 DIGAARALHDQLLALCEQGAAILLISADLDELLSLSDRVAVMADGALVAH 492 D A + ++L AL +G I L + +DE L DR+AVM G L+A Sbjct: 173 DPQARHMIWERLKALLARGKTIFLTTHFMDEAERLCDRLAVMDYGKLIAE 222 >gi|152981150|ref|YP_001353311.1| ABC-type multidrug transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 348 Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 121/221 (54%), Gaps = 7/221 (3%) Query: 8 GTPGALLELRDVSKLYPNGTLANDNVNLSIRAGEIHAILGENGAGKSTVMKMLYGLEQPS 67 G+ +++ ++ ++K Y +G A ++L IR GEI A+LG NGAGK+T++ ++ G+ PS Sbjct: 39 GSLQSIISVKGLTKQYASGFQALKGIDLEIRRGEIFALLGPNGAGKTTLISIICGIVNPS 98 Query: 68 CGNIWLDGQPRVLPDPAHAIAAGIGLVPQHLHLLPSFSVTDNIVLGAEPRRGWRIDRKAA 127 G + DG V A IGLVPQ L S + + RG + Sbjct: 99 SGTVLADGHDIV--QDYRAARTKIGLVPQEL----STDAFETVWATVNFSRGI-FGKPKD 151 Query: 128 LQRVQSLVQRFGLDVDPLARVRDLPVGVQQRVGILKALYRGARVLLLDEPSAVLSAQEAM 187 ++ +++ L +++ L G+++RV I KAL ++L LDEP+A + + Sbjct: 152 HAHIEKVLRSLSLWEKKDSKIFALSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRR 211 Query: 188 TLFQVLRGMVAQGLTVVLISHKLKEIRDVADRFTVLRKGRV 228 +++++RG+ G+T++L +H ++E ++ADR V+RKG + Sbjct: 212 DMWEMVRGLRESGVTIILTTHYIEEAEEMADRIGVIRKGEL 252 Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 19/239 (7%) Query: 266 LLEVRDLEARHGDGRLALRSLSLDIAAGEILGIAGVEGNGQDVLARVLLGLQAASRGEGR 325 ++ V+ L ++ G AL+ + L+I GEI + G G G+ L ++ G+ S G Sbjct: 44 IISVKGLTKQYASGFQALKGIDLEIRRGEIFALLGPNGAGKTTLISIICGIVNPSSGTVL 103 Query: 326 LQGLRFTGLSVRQVRACGVAYIAEDRMHDGVAAEMSIADNLIAVTYHKAPFSR--YGWLD 383 G V+ RA R G+ + ++ + + FSR +G Sbjct: 104 ADGHDI----VQDYRAA--------RTKIGLVPQ-ELSTDAFETVWATVNFSRGIFG--- 147 Query: 384 STAIGRAATALMQRCGIVAPSPATLIGALSGGNMQKLVLGREVAAGPRLLIASQPTRGVD 443 A + R + + I ALSGG +++++ + ++ P++L +PT GVD Sbjct: 148 -KPKDHAHIEKVLRSLSLWEKKDSKIFALSGGMKRRVMIAKALSHEPQILFLDEPTAGVD 206 Query: 444 IGAARALHDQLLALCEQGAAILLISADLDELLSLSDRVAVMADGALVAHFDAAGLGADV 502 + R + + + L E G I+L + ++E ++DR+ V+ G L+ D A L A + Sbjct: 207 VELRRDMWEMVRGLRESGVTIILTTHYIEEAEEMADRIGVIRKGELILVEDKAALMAKL 265 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 13/236 (5%) Query: 13 LLELRDVSKLYPNGTLANDNVNLSIRAGEIHAILGENGAGKSTVMKMLYGLEQPSCGNIW 72 +L + VSK + G A +VN+ I G+I+ ++G NGAGK+T ++ GL Q G+ Sbjct: 6 ILNIAGVSKRF-GGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFE 64 Query: 73 LDGQPRVLPDPAHAIAAGIGLVPQHLHLLPSFSVTDNIVLGAEPRR-----GWRIDRKAA 127 L G+P P AGI Q++ L + +N+++G R G KAA Sbjct: 65 LAGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAA 124 Query: 128 L-------QRVQSLVQRFGLDVDPLARVRDLPVGVQQRVGILKALYRGARVLLLDEPSAV 180 QR L++ G+ R L G Q+R+ I +AL ++L LDEP+A Sbjct: 125 RREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAG 184 Query: 181 LSAQEAMTLFQVLRGMVAQGLTVVLISHKLKEIRDVADRFTVLRKGRVSGSGLVRD 236 ++A E + L ++L + A+G T++LI H +K + + DR TVL G+ G+ D Sbjct: 185 MNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPAD 240 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,231,664 Number of extensions: 53529 Number of successful extensions: 466 Number of sequences better than 1.0e-08: 59 Number of HSP's gapped: 357 Number of HSP's successfully gapped: 93 Length of query: 531 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 443 Effective length of database: 895,685 Effective search space: 396788455 Effective search space used: 396788455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)