BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2364.p
         (269 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981988|ref|YP_001355349.1| molybdenum transport regulatory...   148   3e-37

>gi|152981988|ref|YP_001355349.1| molybdenum transport regulatory
           protein ModE [Janthinobacterium sp. Marseille]
          Length = 264

 Score =  148 bits (374), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/247 (36%), Positives = 136/247 (55%), Gaps = 3/247 (1%)

Query: 20  QRLDQRFFALLDAIAQTGSINRAASTAGYSYKGAWMLLESAGNLVNGALIETVTGGKGGG 79
           +R D     LL+ I  +GSI+ AA+  G SYK AW  +ES  NL +  L+    GG  GG
Sbjct: 19  KRWDH--LELLERIDASGSISAAATAMGMSYKAAWQAVESVNNLSHEPLVIRQPGGSTGG 76

Query: 80  GTRLTPAAVELLAVWRELQRRNLEFLHRQETWLNQLPALAGLLRRMSMKTSARNQFAGVI 139
           GT LT     ++A +R L++            ++       + RR  M+TSARNQF G +
Sbjct: 77  GTCLTEYGRRVVATYRRLEQEWAAVPAAIGRTMDDFDQYYTMSRRFDMQTSARNQFLGTV 136

Query: 140 SAIDTGPVTTQVTVTIAGAQEIVATMTTTAANRLKIKIGGNAIALIKSSAVVLVTDFAGF 199
           SA+  G V  +V + I    E+ A +T  +A  L +++G  A AL+K+  ++L  +   F
Sbjct: 137 SAVKKGAVNAEVILDIGNGAELAAIITNDSAEHLALEVGSEAYALVKAQWIILTVE-TNF 195

Query: 200 ALSARNQFEGTVSRVERGAVSSLVVLTLPGGACMTASLTNDAIDALSLTVGQGATAVFKA 259
             SARN   GTV R + GAV++ VV+ LPGG  + + +TN+++  L L  G  ATA+ KA
Sbjct: 196 KTSARNSLTGTVVRCQEGAVNAEVVIELPGGKTVASIITNESVKVLGLKEGVRATAMIKA 255

Query: 260 YAVMVAV 266
             +++AV
Sbjct: 256 SHIILAV 262



 Score = 58.2 bits (139), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 48/68 (70%)

Query: 202 SARNQFEGTVSRVERGAVSSLVVLTLPGGACMTASLTNDAIDALSLTVGQGATAVFKAYA 261
           SARNQF GTVS V++GAV++ V+L +  GA + A +TND+ + L+L VG  A A+ KA  
Sbjct: 127 SARNQFLGTVSAVKKGAVNAEVILDIGNGAELAAIITNDSAEHLALEVGSEAYALVKAQW 186

Query: 262 VMVAVQQD 269
           +++ V+ +
Sbjct: 187 IILTVETN 194


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.129    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 529,485
Number of extensions: 18541
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 187
Effective length of database: 917,867
Effective search space: 171641129
Effective search space used: 171641129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)