BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2361.p (542 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979868|ref|YP_001354671.1| two-components system response ... 239 3e-64 gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptio... 239 4e-64 gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(... 236 2e-63 gi|152981133|ref|YP_001355363.1| sigma-54 dependent response reg... 233 3e-62 gi|152982294|ref|YP_001354298.1| transcriptional regulator [Jant... 224 2e-59 >gi|152979868|ref|YP_001354671.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 471 Score = 239 bits (611), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/345 (40%), Positives = 200/345 (57%), Gaps = 27/345 (7%) Query: 203 VIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEVIARAIHYLSPRKDGPFIKVNCAA 262 ++G S+AM + AQ+ + A S + + + GESG+GKE+ AR IH S R D PF+ VNC A Sbjct: 140 LMGQSEAMLALRAQIARLARSMAPVAISGESGSGKELAARDIHAQSARSDKPFVAVNCGA 199 Query: 263 LSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTLFLDEIGEISPAFQAKLLRVLQER 322 + E L+E+E FG+ KGAFTGA +R G F+ A+GGTL LDE+ ++ A Q KLLR +QER Sbjct: 200 IPEALMEAEFFGYRKGAFTGAVDDRDGFFQAANGGTLLLDEVADLPLAMQVKLLRAIQER 259 Query: 323 EFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADLYYRINVVSIFIPPLRERREDIP 382 +VG + VDVR+++AT+++L V +G FR DLYYR+NV+ + +PPLRER +DI Sbjct: 260 RVRKVGATTEEPVDVRIISATHQNLHDCVGRGTFRQDLYYRLNVIELNLPPLRERLDDIA 319 Query: 383 YLVEHFLEKFRVENQRAMVAMSPQAMKVMINCYWPGNVRELENCVERTATMMRGDLITEV 442 L + L + R ++P A++ ++ +PGNVRELEN +ER A D + EV Sbjct: 320 LLAKAILTRLDAGQAR----LTPAALEALLQYSFPGNVRELENILER-ALAFANDGVIEV 374 Query: 443 HFSCQQNKCLTKVLHEPGQQQPVVVVPLERISAHTLPSSPSGMVKDKPLAATP--PTS-- 498 + + K H P V E + A +P KPLAAT P S Sbjct: 375 ------SDLVLKAAHTPK------AVAAEMVEALAVPEQAMVAPDAKPLAATSDLPGSLP 422 Query: 499 ------ERERLIWAMEQCGWVQAKAARALNISPRQMGYALQKFNI 537 ERE + A+ + + + +AA L IS RQ+ Y +Q+ +I Sbjct: 423 DHLDDVEREIIRRALSKTQFNRTQAAELLGISFRQLRYRMQRLDI 467 >gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptional activator [Janthinobacterium sp. Marseille] Length = 550 Score = 239 bits (609), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 128/263 (48%), Positives = 174/263 (66%), Gaps = 19/263 (7%) Query: 182 QLQEEKRQLSRQLQ------GKYKLDN-----VIGISKAMQEVFAQVHQSAPSRSTMLLR 230 QLQEE + +L + ++DN +I S MQ++ A + A +T+L+ Sbjct: 216 QLQEELARAQEKLHRFEMEVSQLRMDNPAIAGLITRSPGMQQITALAQKVAKVSATVLIS 275 Query: 231 GESGTGKEVIARAIHYLSPRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERK-G 289 GESG GKEV+ R IH S GPF+K+NC A+ LLESELFG+E GAFTGAQ + K G Sbjct: 276 GESGVGKEVLTRLIHKESAHHAGPFVKINCGAIPRDLLESELFGYEAGAFTGAQRQGKVG 335 Query: 290 RFELAHGGTLFLDEIGEISPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEK 349 E+A GTLFLDEIGE+ Q KLL+VLQ+R R+GG+R I+VDVR+V ATNRDL+ Sbjct: 336 MIEVADKGTLFLDEIGELPLDLQVKLLQVLQDRTLTRLGGTRPIQVDVRVVAATNRDLQA 395 Query: 350 AVAKGEFRADLYYRINVVSIFIPPLRERREDIPYLVEHFLEKFRVE---NQRAMVAMSPQ 406 V +FR+DL+YR+NVV + +PPLRERREDI L++H+L++ + ++R +S Q Sbjct: 396 MVDARQFRSDLFYRLNVVPLHVPPLRERREDILPLIQHYLDELNAQYDLDKR----LSEQ 451 Query: 407 AMKVMINCYWPGNVRELENCVER 429 A+ +++ WPGNVREL N VER Sbjct: 452 ALAALLDYDWPGNVRELRNMVER 474 >gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 236 bits (602), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 123/260 (47%), Positives = 173/260 (66%), Gaps = 1/260 (0%) Query: 180 RQQLQEEKRQLSRQLQGKYKLDNVIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEV 239 R+ L+E R+ S + Q + ++G + AMQ+VF + + + S T+L+ GESG+GKE+ Sbjct: 114 RRALEESLRETSVE-QVSAETPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKEL 172 Query: 240 IARAIHYLSPRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTL 299 +ARA+H SPR PFI +N AA+ + LLESELFGHE+GAFTGAQ R+GRFE A GTL Sbjct: 173 VARALHKHSPRASQPFIALNTAAIPKDLLESELFGHERGAFTGAQATRRGRFEQAENGTL 232 Query: 300 FLDEIGEISPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRAD 359 FLDEIG++ Q +LLRVL + F RVGG + +K +VR++ AT+++LE V +G FR D Sbjct: 233 FLDEIGDMPFDLQTRLLRVLSDGHFYRVGGHQPLKANVRVIAATHQNLEHRVREGLFRED 292 Query: 360 LYYRINVVSIFIPPLRERREDIPYLVEHFLEKFRVENQRAMVAMSPQAMKVMINCYWPGN 419 LY+R+NV+ + +P LRERREDIP L HFL++ + + MS AM+ + + PGN Sbjct: 293 LYHRLNVIRLRLPSLRERREDIPILTRHFLQQSAKQLGVEVKRMSDSAMQFLSSLELPGN 352 Query: 420 VRELENCVERTATMMRGDLI 439 VR+LEN M G + Sbjct: 353 VRQLENLCNWITVMAPGQTV 372 >gi|152981133|ref|YP_001355363.1| sigma-54 dependent response regulator [Janthinobacterium sp. Marseille] Length = 481 Score = 233 bits (593), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 133/302 (44%), Positives = 181/302 (59%), Gaps = 19/302 (6%) Query: 179 ERQQLQEEKRQLSRQLQGKYKLDNV---IGISKAMQEVFAQVHQSAPSRSTMLLRGESGT 235 +R L+ E L R+L L V +G S A++ + + + A ST+L+ GESGT Sbjct: 159 DRAHLRRENFILRRELDSHIDLAGVEGLVGASAALEPIREAIKRLATVPSTVLITGESGT 218 Query: 236 GKEVIARAIHYLSPRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERKGRFELAH 295 GKE+ ARA+H LS R F+ +NC A++ ++ESELFGH KGAF+GA R+G F A Sbjct: 219 GKEIAARAMHKLSNRSHNHFVPINCGAVAPDIIESELFGHIKGAFSGAASSREGLFFYAQ 278 Query: 296 GGTLFLDEIGEISPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGE 355 GGTLFLDE+ E+ A Q KLLRVL+E+ VG R I VDVR++ ATNR++E+AV +G Sbjct: 279 GGTLFLDEVAELPLAMQVKLLRVLEEKRIRPVGAEREIPVDVRVIAATNRNVEEAVQEGR 338 Query: 356 FRADLYYRINVVSIFIPPLRERREDIPYLVEHFLEKFRVENQRAMVAMSPQ-AMKVMINC 414 FR DLYYR+NVV + +PPLRER EDIP L E+F+ + + Q + A P A+ + Sbjct: 339 FRQDLYYRLNVVQLHMPPLRERTEDIPALAEYFVRQ--LAQQLGVPAKKPDSALFASLAG 396 Query: 415 Y-WPGNVRELENCVER----------TATMMRGDLIT--EVHFSCQQNKCLTKVLHEPGQ 461 Y WPGNVREL N +ER TA G T +V + + + K+L E G Sbjct: 397 YSWPGNVRELRNLIERWLILGNISDVTAANNTGSTTTNGDVTLEAVEKQHILKILAEVGG 456 Query: 462 QQ 463 + Sbjct: 457 NK 458 >gi|152982294|ref|YP_001354298.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 371 Score = 224 bits (570), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 121/275 (44%), Positives = 171/275 (62%), Gaps = 1/275 (0%) Query: 164 NLIGQTVRLYRSVAAERQQLQEEKRQLSRQLQGKYKLDNVIGISKAMQEVFAQVHQSAPS 223 N+ G+ V L S LQ + + L + ++ G S MQ++F + + AP+ Sbjct: 6 NVCGEVVDLPISNTHNIAVLQAQNSSPTISLNKLARCGDLYGASAPMQQLFQMIGKVAPT 65 Query: 224 RSTMLLRGESGTGKEVIARAIHYLSPRKDGPFIKVNCAALSETLLESELFGHEKGAFTGA 283 + +L+ GESGTGKE++A+AIH LS +D PF+ +NC+A+S L+E+ELFGHE+G+FTGA Sbjct: 66 TANVLIAGESGTGKELVAQAIHQLSREQDKPFVALNCSAVSPQLIEAELFGHERGSFTGA 125 Query: 284 QGERKGRFELAHGGTLFLDEIGEISPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTAT 343 +KG FE A GGTLFLDE+ E+S Q KLLRVL+ F R+G +V VR+V AT Sbjct: 126 IRMQKGCFERADGGTLFLDEVTEMSLDMQVKLLRVLETSRFCRIGAEEETEVKVRVVAAT 185 Query: 344 NRDLEKAVAKGEFRADLYYRINVVSIFIPPLRERREDIPYLVEHFLEKFRVENQRAMVAM 403 NRD +A+ G R+DL+YR+ V + +PPLRER EDI L FL++ E+ R V Sbjct: 186 NRDPVEAMKSGILRSDLFYRLAVFPLDLPPLRERGEDIRLLAGLFLDQLNEEDGRNRV-F 244 Query: 404 SPQAMKVMINCYWPGNVRELENCVERTATMMRGDL 438 S + +++ WPGNVREL+N V R M +L Sbjct: 245 SKASWRLLNEYNWPGNVRELKNVVHRAYIMADQEL 279 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,060,107 Number of extensions: 38995 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 7 Length of query: 542 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 454 Effective length of database: 895,685 Effective search space: 406640990 Effective search space used: 406640990 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)