BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2353.p
         (379 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980888|ref|YP_001352942.1| cysteine desulfurase [Janthinob...   259   2e-70
gi|152980945|ref|YP_001354225.1| selenocysteine lyase [Janthinob...    93   3e-20

>gi|152980888|ref|YP_001352942.1| cysteine desulfurase
           [Janthinobacterium sp. Marseille]
          Length = 417

 Score =  259 bits (662), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 151/387 (39%), Positives = 228/387 (58%), Gaps = 14/387 (3%)

Query: 1   MDTI------IYLDNNATTRPTPEVLAAMQACQHEAWGNPSSK-HRVGDAARQRMNSARA 53
           +DTI      IY+D +ATT   P V   M     E +GNP+S+ H  G  A + +  AR 
Sbjct: 10  IDTIKAPHFPIYMDYSATTPIDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEDARE 69

Query: 54  EVAALLAASAAELVFTSGATEANHMAILGALALQPQR-RHIVSSLVEHPSTLLLLRHLQA 112
           +VAAL+ A   E+++TSGATE N++A+ GA      + +HI++   EH + L  +R L+ 
Sbjct: 70  QVAALVNADPREIIWTSGATEGNNLALKGAAQFYKTKGKHIITVKTEHKAVLDTVRELER 129

Query: 113 QGVRISWIGVDEHGQLQLDELAAAITSDTALVSLMWANNETGVVFPIVQAAELARQRGVL 172
           QG   +++   ++G + +++LA AI  DT LVS+M  NNE GV+ PI +  EL R +G++
Sbjct: 130 QGFEATYLQPQDNGLITIEQLAEAIRPDTILVSVMLVNNEIGVIQPIDEIGELCRSKGII 189

Query: 173 FHTDAVQAMGRVPCDVAGMGVDLLSLSAHKLHGPKGIGALYVRKGIKL---PPLLFGHQE 229
           FH DA QA G+V  D+    VDL++ +AHK +GPKGIGALYVR+  ++     +  G  E
Sbjct: 190 FHCDAAQATGKVKIDLEKSKVDLMTFTAHKTYGPKGIGALYVRRKPRVRIEAQMHGGGHE 249

Query: 230 RGRRGGTEDVAGIVGLGVAADQARAAL-PRMLAVSALRQRFERGLACLPQVQINGAGAAR 288
           RG R GT     IVG+G A   AR  +   ++ +  LR R  +GL  + +V ING    R
Sbjct: 250 RGLRSGTLATHQIVGMGEAFRIAREEMDEEIVRIKGLRDRLAKGLMDMEEVYINGDMDHR 309

Query: 289 LPNTVSVRFGQVHAERVLDRLDRLGICASSGSACTASGDMPSHVLMAMGMSSEQAAATIR 348
           +P+ ++V F  V  E ++  +  L +  SSGSACT++   PS+VL A+G S E A ++IR
Sbjct: 310 VPHNLNVSFNYVEGESLIMAIKDLAV--SSGSACTSASLEPSYVLRALGRSDELAHSSIR 367

Query: 349 FSLSRDTREDEIDAVLAALSEIVQPLQ 375
           F+  R T E+++D  +  + E V  L+
Sbjct: 368 FTFGRFTTEEDVDFTIKLIKEKVNKLR 394


>gi|152980945|ref|YP_001354225.1| selenocysteine lyase
           [Janthinobacterium sp. Marseille]
          Length = 653

 Score = 92.8 bits (229), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 163/396 (41%), Gaps = 47/396 (11%)

Query: 4   IIYLDNNATT-RPTPEVLAAMQACQHEAWGNPSSKHRVGDAARQRMNSARAEVAALL-AA 61
           +++ DN ATT +P   +       +HE      + H +   A      AR  V   + A 
Sbjct: 267 LVWFDNAATTHKPQSVIDRIAYFYEHENSNIHRAAHELAARATDAYEGARQRVKNFINAP 326

Query: 62  SAAELVFTSGATEANHMAI--LGALALQPQRRHIVSSLVEHPSTLLLLRHLQAQGVRISW 119
              E++F  G TEA ++     G   +      IVS+L  H + +   +   A+G ++  
Sbjct: 327 DVNEVIFVRGTTEAINLVAKSWGGQHVGEGDEIIVSNLEHHANIVPWQQLAAAKGAKLRV 386

Query: 120 IGVDEHGQLQLDELAAAITSDTALVSLMWANNETGVVFPIVQAAELARQRGVLFHTDAVQ 179
           I VD+ GQ+ L E    +   T +V++   +N  G V P+ +   LA + G     D  Q
Sbjct: 387 IPVDDSGQVILSEYQKLLNDRTKIVAVTQVSNALGTVVPVKEIVALAHRAGAKALVDGAQ 446

Query: 180 AMGRVPCDVAGMGVDLLSLSAHKLHGPKGIGALYVRKGI--KLPPL-------------- 223
           ++  +  DV  +G D    S HK+ GP GIG ++ ++ I   +PP               
Sbjct: 447 SISHMRVDVQDIGADFFVFSGHKVFGPTGIGVVWGKREILEDMPPWQGGGNMIADVTFEK 506

Query: 224 -LFGHQERGRRGGTEDVAGIVGLGVAADQARAALPRMLAVSALRQRFE--------RGLA 274
            +F         GT ++A  VGLG A D         +A      R+E        + L 
Sbjct: 507 TVFQPIPNKFEAGTGNIADAVGLGAAIDYVNKVGIENIA------RYEHELLVYGMQKLG 560

Query: 275 CLPQVQINGAGAARLPNTVSVRFGQVHAERVLDRLDRLGICASSGSACTASGDMPSHVLM 334
            +P V++ G  A +  + +S        E V   L+  GI   +G  C         +L 
Sbjct: 561 AIPGVRLIGTAADKA-SVMSFVLQGYTTEEVGHALNDEGIAVRTGHHCAQP------ILR 613

Query: 335 AMGMSSEQAAATIRFSLSRDTREDEIDAVLAALSEI 370
             G+ +     T+R SL+     DEID ++A ++ +
Sbjct: 614 RFGVET-----TVRPSLAFYNTFDEIDRLVAVVTRL 644


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 795,324
Number of extensions: 31004
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 294
Effective length of database: 906,776
Effective search space: 266592144
Effective search space used: 266592144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)