BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2333.p
         (251 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980263|ref|YP_001355348.1| ABC-type molybdate transport sy...   300   7e-83

>gi|152980263|ref|YP_001355348.1| ABC-type molybdate transport
           system substrate-binding protein [Janthinobacterium sp.
           Marseille]
          Length = 251

 Score =  300 bits (767), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 143/229 (62%), Positives = 179/229 (78%)

Query: 21  AEEIHVAVAANFTQPFKQIAAAFEQATGNKVVAAFGSTGQFYAQINNGAPFEILLAADAD 80
           AEE+ VAVAANFT P K IAA FE+ATG+KV  +FG+TG+FYAQI NGAP+++ LAAD +
Sbjct: 23  AEEVQVAVAANFTAPMKVIAADFEKATGHKVTPSFGATGKFYAQITNGAPYDVFLAADDE 82

Query: 81  TPALLEKQKTAVAGTRFTYARGKLVLWSAKPGVVDAQGEILKKGAFEHLSLANPKLAPYG 140
           TP  LEK+   V G+RFTYA GKLVLWSAKP  VDA+GE+LKK  F H++LA PKLAPYG
Sbjct: 83  TPIKLEKENGIVPGSRFTYATGKLVLWSAKPDFVDAKGEVLKKANFAHIALATPKLAPYG 142

Query: 141 LAGVQTMQKLGLEETLRPKIVQAENINQAYQFIASGNALLGFVALSQVVRNGQIADGSAW 200
           LA  ++M+KLG+ ++L+ K VQ E+I Q + FI++GNA LGFVALSQV   G+I  GSAW
Sbjct: 143 LAAEESMKKLGVYDSLQAKFVQGESIGQTFTFISTGNAELGFVALSQVFEGGKIKSGSAW 202

Query: 201 IVPAELYAPILQDAVLLEKGRDHPAALALMTYLKSEPARQVIRGYGYEL 249
           IVPA L+ PI QDAV+L KG+D+ AA   + YLKSEP + +IR YGY+L
Sbjct: 203 IVPANLHNPIRQDAVILNKGKDNKAAAEFVNYLKSEPVKAIIRSYGYDL 251


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 550,938
Number of extensions: 20552
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 170
Effective length of database: 921,564
Effective search space: 156665880
Effective search space used: 156665880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)