BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2332.p (250 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981300|ref|YP_001355347.1| molybdate transport system perm... 315 1e-87 gi|152980049|ref|YP_001352502.1| sulfate transport system permea... 106 1e-24 gi|152980225|ref|YP_001354281.1| sulfate transport system permea... 100 7e-23 gi|152980950|ref|YP_001352503.1| sulfate ABC transporter, permea... 84 8e-18 gi|152981039|ref|YP_001354282.1| sulfate transport system permea... 66 2e-12 >gi|152981300|ref|YP_001355347.1| molybdate transport system permease protein [Janthinobacterium sp. Marseille] Length = 224 Score = 315 bits (808), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 156/223 (69%), Positives = 184/223 (82%) Query: 3 LTAEDWSAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVL 62 T + A+ LTL LAS+ T++LLL+GTPLAWWLARTRS + V A VALP+VLPP V+ Sbjct: 2 FTDPNIGAIVLTLKLASLTTIILLLIGTPLAWWLARTRSWLKSPVGAFVALPIVLPPTVI 61 Query: 63 GFYLLVLMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAMGERP 122 GFYLLV +GP GPVGQLTQA+G G LPFSF GLV+ S+ YSMPFVVQP+QNAFEAMGERP Sbjct: 62 GFYLLVALGPNGPVGQLTQAMGFGTLPFSFTGLVVGSVFYSMPFVVQPIQNAFEAMGERP 121 Query: 123 MEVAATLRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLS 182 +EVAATLRASPLD FF+V +PLA PG+LTA V+GFAHTVGEFGVVLMIGGNIP +TR++S Sbjct: 122 LEVAATLRASPLDTFFSVTLPLAKPGYLTAIVMGFAHTVGEFGVVLMIGGNIPNQTRMIS 181 Query: 183 MQIYDHVEAFEYAQAHRLAGAMLVFSFLVLLVMMRLGRAGKTR 225 +QIYDHVEA EYAQAH LA MLVFS VL+++ L G+ + Sbjct: 182 VQIYDHVEALEYAQAHWLAAGMLVFSMAVLIILYTLNPTGRRK 224 >gi|152980049|ref|YP_001352502.1| sulfate transport system permease protein [Janthinobacterium sp. Marseille] Length = 287 Score = 106 bits (265), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 9 SAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFYLLV 68 ++ +L+ + I VL G +AW L R + + + A+V LP LP AV G L Sbjct: 66 ASYKLSFGASLIGAVLNAFFGGIVAWVLVRYKFPGKKIIDAMVDLPFALPTAVAGIALTA 125 Query: 69 LMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAMGERPMEVAAT 128 L P G +G+ +A+G+ + F+ G+++A +PFVV+ +Q E M + E AA+ Sbjct: 126 LYSPNGWIGRYLEAIGIKV-AFTPLGVIIALTFIGLPFVVRTVQPVLEDMEKELEEAAAS 184 Query: 129 LRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQIYDH 188 L AS F V P P LT L FA GE+G V+ I GN+P + + + I Sbjct: 185 LGASHWQTFTKVIFPTVFPALLTGFALAFARATGEYGSVIFIAGNMPMVSEITPLFIVTK 244 Query: 189 VEAFEYAQAHRLAGAMLVFSFLVLLVMMRLGRAGKTRLKAGK 230 +E ++YA A +A ML+ SFL+LL + L + R +A K Sbjct: 245 LEQYDYAGATAIAVVMLLASFLMLLTINLLQAWTRKRGQAEK 286 >gi|152980225|ref|YP_001354281.1| sulfate transport system permease protein [Janthinobacterium sp. Marseille] Length = 260 Score = 100 bits (250), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 104/195 (53%), Gaps = 1/195 (0%) Query: 10 AVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFYLLVL 69 + ++T+ A T+++ +G LAW + R R + ++V LP LP +V G L L Sbjct: 45 SYKITIQGAFYSTIIVTFIGFLLAWIITRYDFPGRRLIDSLVDLPFALPTSVAGITLSAL 104 Query: 70 MGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAMGERPMEVAATL 129 P G +GQ + G+ + ++F G+V+A S+PF+V+ +Q E M + E A L Sbjct: 105 FIPTGWLGQWFEIFGIKI-SYAFPGIVVAMTFTSLPFIVRSVQPVLEDMEKELEEAALML 163 Query: 130 RASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQIYDHV 189 A+ F+ V +P P +T + F ++GEFG V+MI GNIP +T V S+ ++ + Sbjct: 164 GANKWQIFWRVILPTLIPALITGSSQAFIRSLGEFGAVIMIAGNIPFETEVTSLMLFVRL 223 Query: 190 EAFEYAQAHRLAGAM 204 + + Y A +A + Sbjct: 224 QEYNYPAAAAIASVV 238 >gi|152980950|ref|YP_001352503.1| sulfate ABC transporter, permease protein [Janthinobacterium sp. Marseille] Length = 302 Score = 84.0 bits (206), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 1/204 (0%) Query: 9 SAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFYLLV 68 SA++LTL A+I L L+ G +W +A+ + + ++ LP + P + G ++ Sbjct: 78 SAIKLTLLTAAIAVPLNLVFGVAASWCIAKFDFRGKSILLTLIDLPFSVSPVISGLIYVL 137 Query: 69 LMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAMGERPMEVAAT 128 L G QG G Q + +L F+ G+VLA++ + PFV + L ++ G E A Sbjct: 138 LFGAQGWFGGWLQEHNIKIL-FAVPGIVLATIFVTFPFVARELIPLMQSQGSEEEEAALV 196 Query: 129 LRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQIYDH 188 L AS F+ V +P G L +L A +GEFG V ++ G+I G+T + +Q+ Sbjct: 197 LGASGWKTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGQTNTIPLQVEIL 256 Query: 189 VEAFEYAQAHRLAGAMLVFSFLVL 212 ++++ A +A + + + + L Sbjct: 257 YNEYQFSAAFAVASLLAMLALVTL 280 >gi|152981039|ref|YP_001354282.1| sulfate transport system permease protein [Janthinobacterium sp. Marseille] Length = 283 Score = 66.2 bits (160), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 1/173 (0%) Query: 9 SAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFYLLV 68 A+ LTL+ A + + L+ G LAW + R + +V +P P V GF LV Sbjct: 58 HALGLTLTAAVLTVPINLVFGILLAWCVTHYDFFGRRLLVTLVEIPYATSPVVAGFCYLV 117 Query: 69 LMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAMGERPMEVAAT 128 + G +G +G+ A + L+ F++ G+++ ++ + P++ + L + G A + Sbjct: 118 VYGLEGTIGKWLYANDVQLM-FAWPGIIMVTVFVTAPYIARILMPLMQKQGTEEEIAALS 176 Query: 129 LRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVL 181 L AS F+ V +P L AV+ A VGEFG V ++ G I +T L Sbjct: 177 LGASGWQIFWRVTLPNIKWALLYGAVITNARAVGEFGAVAVVSGTIMNQTLTL 229 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.139 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 403,619 Number of extensions: 12947 Number of successful extensions: 65 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 65 Number of HSP's successfully gapped: 9 Length of query: 250 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 169 Effective length of database: 921,564 Effective search space: 155744316 Effective search space used: 155744316 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)