BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2331.p (372 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981123|ref|YP_001355346.1| ABC-type molybdate transport sy... 397 e-112 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 142 3e-35 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 115 4e-27 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 110 1e-25 gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding pro... 110 2e-25 >gi|152981123|ref|YP_001355346.1| ABC-type molybdate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 385 Score = 397 bits (1020), Expect = e-112, Method: Compositional matrix adjust. Identities = 202/358 (56%), Positives = 258/358 (72%), Gaps = 4/358 (1%) Query: 15 IIARMAYGYGGAGEFQLDLDLKLPGQGVSALSGPSGCGKTTFLRCMAGLLRPSRGYLEVN 74 I AR Y F+LD+DL LPG+GV+AL GPSG GKTT LR M GL R S YLEVN Sbjct: 31 IRARFNIAYSA---FKLDVDLTLPGRGVTALFGPSGSGKTTCLRAMTGLERFSGSYLEVN 87 Query: 75 GEVWQDSQRQYFLPTHRRALGYVFQEASLLPHLSVSRNLDYGARRSGAVSSAASRQKIID 134 GEVWQD +R FLPT++R LGYVFQEASL HL+V RNL+YG RR A + S + + Sbjct: 88 GEVWQDDERNIFLPTYKRPLGYVFQEASLFAHLNVQRNLEYGRRRVSAATHQVSLEHAVA 147 Query: 135 LLGIAALLQSMPSALSGGERQRVAMARALFTAPRLLLMDEPMAALDNERKRDILPYLERL 194 LL I LLQ P LSGGERQRVA+ARAL T+PR+LLMDEP+AALD++RK +I+PYLERL Sbjct: 148 LLDIGHLLQRNPDKLSGGERQRVAIARALATSPRILLMDEPLAALDSKRKEEIMPYLERL 207 Query: 195 RDELAIPILYISHHPEEIARLADTLVLMRQGRCLASGPLTTLLSRLDLPLAHAEDAGAVI 254 DEL IP++Y+SH +E+ARLAD LVL+ G+ +ASG + L++RLDL AH + A A++ Sbjct: 208 HDELDIPVIYVSHSADEVARLADHLVLLESGKVIASGATSDLMTRLDLNFAHGDTASALV 267 Query: 255 EAKVAAHDETYHLTRLVLAGGEIFVPRRELPVGQPVRLQIHARDVSLALSPSHDSSILNR 314 A V AHD +HLT +GG++ +P++ GQ VR++I ARDVSL+L P DSSILN Sbjct: 268 VATVTAHDVDFHLTSAQFSGGQLLLPQQAATAGQQVRIRIQARDVSLSLLPQRDSSILNI 327 Query: 315 LSATVLKLAPAQHPAHVLVVLDAGGEQLLARITRRSCDQLALVPGQPVWAQIKSVALL 372 + ATV +L+ P V++ LDA G +LLARITR+SC+ + L PG V+AQIK +A+L Sbjct: 328 IPATVTELSD-DAPGQVMIGLDANGTRLLARITRKSCEAMHLAPGGQVFAQIKGIAIL 384 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 142 bits (359), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 123/206 (59%), Gaps = 12/206 (5%) Query: 32 DLDLKLPGQGVSALSGPSGCGKTTFLRCMAGLLRPSRGYLEVNGEVWQDSQRQYFLPTHR 91 ++ L P ++AL GPSGCGKTT LR +AGL +P G + ++GE D+ ++ Sbjct: 20 NVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGE---DASARH---VRE 73 Query: 92 RALGYVFQEASLLPHLSVSRNLDYGARRSGAVSSAASRQ------KIIDLLGIAALLQSM 145 R +G+VFQ +L H++V N+ +G R A + + Q K+++L+ + L Sbjct: 74 RQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKVTKLLELVQLDWLADRY 133 Query: 146 PSALSGGERQRVAMARALFTAPRLLLMDEPMAALDNERKRDILPYLERLRDELAIPILYI 205 P LSGG+RQR+A+ARAL PR+LL+DEP ALD + ++++ +L RL D+L + +++ Sbjct: 134 PPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDDLHVTSIFV 193 Query: 206 SHHPEEIARLADTLVLMRQGRCLASG 231 +H EE +AD +VLM +G G Sbjct: 194 THDQEEALEVADQIVLMNKGNVEQIG 219 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 115 bits (288), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 102/184 (55%), Gaps = 2/184 (1%) Query: 42 VSALSGPSGCGKTTFLRCMAGLLRPSRGYLEVNGEVWQDSQRQYFLPTHRRALGYVFQEA 101 + L G SGCGKTT LR +AG G + + G+ + S Q+ R +G VFQ+ Sbjct: 42 IGCLLGQSGCGKTTVLRAIAGFESLIAGRITLGGK--ELSNAQHTTVPEARHVGVVFQDY 99 Query: 102 SLLPHLSVSRNLDYGARRSGAVSSAASRQKIIDLLGIAALLQSMPSALSGGERQRVAMAR 161 +L PHLSVS N+ +G R+ A K++ L+G+ A + P LSGG++QRVA+AR Sbjct: 100 ALFPHLSVSDNIGFGLRKLAAAERNGRINKLLALVGLQAQEKKFPHELSGGQQQRVALAR 159 Query: 162 ALFTAPRLLLMDEPMAALDNERKRDILPYLERLRDELAIPILYISHHPEEIARLADTLVL 221 AL P LLL+DEP + LD + + + + + E+ + ++H E +AD + + Sbjct: 160 ALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTHDQHEAFAIADQIGV 219 Query: 222 MRQG 225 M+ G Sbjct: 220 MQDG 223 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/203 (34%), Positives = 107/203 (52%), Gaps = 18/203 (8%) Query: 32 DLDLKLPGQGVSALSGPSGCGKTTFLRCMAGLLRPSRGYLEVNGEVWQDSQRQYFLPTHR 91 ++ L + L GPSGCGKTT LR +AG P G ++ D +P + Sbjct: 21 NISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAG------QILLDGVDLTGVPPEQ 74 Query: 92 RALGYVFQEASLLPHLSVSRNLDYGARRSGAVSSAASRQKIID-------LLGIAALLQS 144 R + VFQ +L PH++V N+ + A + A QK +D L G AA Sbjct: 75 RPVRTVFQNYALFPHMTVGGNIAFPLEM--ANTPKAEIQKKVDEALEDVRLTGFAA---R 129 Query: 145 MPSALSGGERQRVAMARALFTAPRLLLMDEPMAALDNERKRDILPYLERLRDELAIPILY 204 P LSGG+RQRV++ARAL T P+LLL+DEP++ALD + + + L L+ E+ I +Y Sbjct: 130 YPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEVGITFIY 189 Query: 205 ISHHPEEIARLADTLVLMRQGRC 227 ++H E L+ + +M +G+ Sbjct: 190 VTHDQAEALALSHRIAVMNKGQV 212 >gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 579 Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 121/236 (51%), Gaps = 16/236 (6%) Query: 7 GPSIAQPGIIARMAYGYGGAGEFQL-DLDLKLPGQGVSALSGPSGCGKTTFLRCMAGLLR 65 P + + + ++ +G G+ + ++ L + G SG GKTT R + GL Sbjct: 299 NPIVVEVNNLTKVFFGPDGSRRVAVSEVSFALRKGETVGIVGESGSGKTTLTRMVLGLET 358 Query: 66 PSRGYLEVNGEVWQD----SQRQYFLPTHRRALGYVFQE--ASLLPHLSVSRNLDYGARR 119 P+ G + + +VW D QR R+ + VFQ+ AS P +V R L Sbjct: 359 PNVGNVRLRDQVWSDLSDAQQR-----AERKRIQVVFQDPLASFDPRYTVERVLFEALGV 413 Query: 120 SGAVSSAASRQKIIDLLGIAAL----LQSMPSALSGGERQRVAMARALFTAPRLLLMDEP 175 +G + +R + I+LL + L LQ P LSGG+RQR+A+ARAL P +L+ DEP Sbjct: 414 AGYTDTEKTRARAIELLHLVRLDQSYLQRRPIELSGGQRQRIAIARALAPEPEVLICDEP 473 Query: 176 MAALDNERKRDILPYLERLRDELAIPILYISHHPEEIARLADTLVLMRQGRCLASG 231 ++ALD + IL L L+D L + L+ISH I R++D +++M+ G + SG Sbjct: 474 VSALDVSVQAQILDLLIDLKDRLGLSCLFISHDLGVIYRVSDRILVMKDGIVVESG 529 Score = 76.6 bits (187), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 107/231 (46%), Gaps = 18/231 (7%) Query: 21 YGYGGAGEFQLDLDLKLPGQGVSALSGPSGCGKTTFLRCMAGL------LRPSRGYLEVN 74 +G+GG + + L AL G SG GK+ R + GL L+ R L + Sbjct: 22 FGHGGPAVIK-GISFALHRGECLALVGESGSGKSVTSRTLVGLTGHRSSLQADR--LSFD 78 Query: 75 GEVWQDSQRQYFLPTHRRALGYVFQEA--SLLPHLSVSRNLDYGARRSGAVSSAASRQKI 132 G+ + + + R +G+V Q+A SL P +V + + ++ +K+ Sbjct: 79 GDDLRRFNERTWRDIRGRRIGFVMQDALGSLDPLRTVGAEVAEPLKLHAKLTKQEREEKV 138 Query: 133 IDLL---GI---AALLQSMPSALSGGERQRVAMARALFTAPRLLLMDEPMAALDNERKRD 186 I LL GI + L P LSGG RQR +A A+ P LL+ DEP ALD + Sbjct: 139 IALLHSVGIPQPESRLMQYPHQLSGGLRQRALIASAIACNPELLIADEPTTALDAAVQAQ 198 Query: 187 ILPYLERLRDELAIPILYISHHPEEIARLADTLVLMRQGRCLASGPLTTLL 237 +L LE LR +L +SH ++RLAD + +M G + GPL +L Sbjct: 199 VLDLLESLRTPDK-AMLVVSHDFAVVSRLADRVAVMWHGEIVEQGPLDAIL 248 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 823,228 Number of extensions: 32668 Number of successful extensions: 301 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 228 Number of HSP's successfully gapped: 63 Length of query: 372 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 287 Effective length of database: 906,776 Effective search space: 260244712 Effective search space used: 260244712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)