BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2329.p
         (432 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979873|ref|YP_001353168.1| electron-transferring-flavoprot...    93   3e-20

>gi|152979873|ref|YP_001353168.1| electron-transferring-flavoprotein
           dehydrogenase [Janthinobacterium sp. Marseille]
          Length = 562

 Score = 93.2 bits (230), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 158/364 (43%), Gaps = 41/364 (11%)

Query: 28  LKVLQIERGEYPGSKNVQGAILYSDALERIIPDFRE-DAPLERHIIEQRMWVLDDQSFIG 86
           + V  +E+G   G+  + GA++   A+  + PD++E  APL   + E R   L ++    
Sbjct: 52  VSVCILEKGGELGAHILSGAVMDPQAITELFPDWKERGAPLNTAVSEDRFLFLTEKK--- 108

Query: 87  GNYRSEDFNKPP----YNRYTIIRAQFDKWFSQKVQEAGALLICETTVTDLLM-DGQRVV 141
             Y++ +F  P     +  Y +  A   +W  Q+ +  G  +       ++L  D   V 
Sbjct: 109 -AYKTLNFMLPACFQNHGNYVVSLANVVRWLGQQAEALGVEVFPGFPAAEILYNDDGSVK 167

Query: 142 GVQTD--------------RVGGSIYADIVVLADGVNSVLARKAGFRPELD----PAEVA 183
           GV T               ++G  ++A   + A+G    L ++   + +L+    P   A
Sbjct: 168 GVATGNMGVNRAGEPTAAFQLGMELHAKYTLFAEGSRGNLGKQLLQKFKLEEGKAPQSYA 227

Query: 184 LAVKEIHFMPEETIASRFNVSGDAGVVIEMVG-KITKGMMGTGFLYTNRDS-VTIGVGCM 241
           + +KE+  +               G+VI   G  +     G  FLY   D+ V +G    
Sbjct: 228 IGIKELWEIDPAL--------HQPGLVIHTAGWPLASDTYGGSFLYHLEDNQVAVGYVVG 279

Query: 242 LSDLKRQKCSPYQLLEDMKAHPAIAPLLEGGEMKEYAAHLIPEGGYHSIPCLYGSGWIVV 301
           L+  +    SP++  +  K HPAI+   EGG+   Y A  I  GG  S+P L   G  ++
Sbjct: 280 LA-YENPYLSPFEEFQRYKTHPAISRFFEGGKRISYGARAITAGGLQSLPKLVFPGGALI 338

Query: 302 GDSGMFVNAVHREGSNLAMTSGRLAAETVIALRAEGLPMNERNLARYRAALNESFVIKDM 361
           G    F+NA   +GS+ AM SG +AA+       EG   +E  L+ Y  A  +S++ +++
Sbjct: 339 GCDAGFLNASRIKGSHAAMKSGMMAADAAFVALNEGRQADE--LSDYPIAFKQSWLHEEL 396

Query: 362 KKYR 365
              R
Sbjct: 397 HVAR 400


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,063,753
Number of extensions: 46040
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 346
Effective length of database: 903,079
Effective search space: 312465334
Effective search space used: 312465334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)