BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2328.p
         (364 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980063|ref|YP_001352276.1| electron transfer flavoprotein ...   131   7e-32

>gi|152980063|ref|YP_001352276.1| electron transfer flavoprotein
           alpha subunit [Janthinobacterium sp. Marseille]
          Length = 309

 Score =  131 bits (329), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 128/231 (55%), Gaps = 15/231 (6%)

Query: 121 LLLGATAQGRDLAGSVATTLKTGLTADCTGLTIDMENRSMAASRPTFGGSLLCTILTLNY 180
           +L  ATA G+++   VA  L     ++ T +       +    RP + G+ + T+ + + 
Sbjct: 87  ILAPATAYGKNILPRVAAKLDVAQISEITKVV-----SADTFERPFYAGNAIATVQSAD- 140

Query: 181 RPQMATVRPRVMAMPEPDRSRSG--QIIEHPLCLVESDIITKVLEYIPDNQQEKPQLPFA 238
             ++ TVR         D +  G    +E+   + +S   + V   +  +   +P+L  A
Sbjct: 141 AVKVITVRGTAF-----DSAAEGGSATVENVTAVADSGKSSFVSRELATSA--RPELTAA 193

Query: 239 DIIVAGGRGMKRAENFQLIWDLAMVLGAEVGATRPVVQANWVQAERQVGQSGKTVRPKLY 298
            I+V+GGRG+   E+F+++  LA  LGA +GA+R  V A +V  + QVGQ+GK V P+LY
Sbjct: 194 KIVVSGGRGLGSEESFKILEPLADKLGAAMGASRAAVDAGYVPNDWQVGQTGKIVAPELY 253

Query: 299 IAAGISGAIQHRVGMADSDVIIAINSDPNAPIFDFASYGIVGNAMTILPAL 349
           IA GISGAIQH  GM DS  I+AIN DP APIF  A YGIVG+   I+P L
Sbjct: 254 IAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFAVADYGIVGDLFEIVPQL 304


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 897,601
Number of extensions: 39414
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 280
Effective length of database: 910,473
Effective search space: 254932440
Effective search space used: 254932440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)