BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2327.p
         (281 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979969|ref|YP_001352275.1| electron transfer flavoprotein ...    90   1e-19

>gi|152979969|ref|YP_001352275.1| electron transfer flavoprotein
           beta subunit [Janthinobacterium sp. Marseille]
          Length = 249

 Score = 90.1 bits (222), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 115/221 (52%), Gaps = 15/221 (6%)

Query: 1   MHIVVCIKQVPD-SAQIRVHPVTNTIMRQGVPAIINPYDLFSLEEALRIKDQVGGRVT-- 57
           M ++V +K+V D + ++RV    + +    V   +NP+D  ++EEA R+K+   G+VT  
Sbjct: 1   MKVLVPVKRVVDFNVKVRVKSDQSGVDIANVKMSMNPFDEIAVEEATRLKE--AGKVTEI 58

Query: 58  -VLTMGPPQAEAALRKCISFGADDAILVTDRAFAGADTLATSYALASAIQRISQDQAVDL 116
             ++ G  Q++  LR  ++ GAD A+LV        D      A+A  ++ ++  +   L
Sbjct: 59  IAVSCGILQSQETLRTAMAIGADRAVLVE------TDVELQPLAVAKLLKAVADKEQPQL 112

Query: 117 VLAGKQTIDGDTAQVGPGIAKRLDLQLLTYVSKIVSLDPIAREIVIQRRAEGGVQVLQTR 176
           ++ GKQ ID D  Q G  +A  LD    TY SK V +D    ++ + R  +GG++V+   
Sbjct: 113 IILGKQAIDDDANQTGQMLAALLDWPQATYASK-VEID--GDKVKVTREVDGGLEVVSLT 169

Query: 177 LPCLITMLEGSNEMRFATMENMFRAARHPIRTWDRTAAGIE 217
           LP ++T     NE R+ T+ N+ +A +  +  +     G++
Sbjct: 170 LPAIVTTDLRLNEPRYVTLPNIMKAKKKTLENFKPADLGVD 210


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 602,652
Number of extensions: 23673
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 199
Effective length of database: 917,867
Effective search space: 182655533
Effective search space used: 182655533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)