BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2325.p
         (376 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980069|ref|YP_001353835.1| 2-isopropylmalate synthase [Jan...   205   4e-54
gi|152979897|ref|YP_001352888.1| 2-isopropylmalate synthase [Jan...    69   6e-13

>gi|152980069|ref|YP_001353835.1| 2-isopropylmalate synthase
           [Janthinobacterium sp. Marseille]
          Length = 516

 Score =  205 bits (521), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 196/359 (54%), Gaps = 16/359 (4%)

Query: 4   INDTTLRDGEQTAGVAFTAEEKIAIARALDEIGVPEMEIGIPIMGEAEIEVIQAIAALPL 63
           I DTTLRDGEQ+ G + T +EKI IAR L+ + V  +E G     + + E I AI+ +  
Sbjct: 11  IFDTTLRDGEQSPGASMTKDEKIRIARQLERLKVDIIEAGFAAASQGDFESIHAISGIIK 70

Query: 64  RSKTMVWGRMCEADLAAAARCNADI----VNLSMPVSDIHIQHKLQRDRDWVLAQIRYFL 119
            +      R  + D+A AA   A      ++  +  S +H++ KL+   D V  Q +  +
Sbjct: 71  DATVCSLSRANDKDIARAAEALAPAERKRIHTFLATSPLHMEKKLRMTPDQVFEQAKMAV 130

Query: 120 PKALDLGMEVCLGGEDSSRADLDFMLRVIETAQAAGARRFRFADTLGLLDPFATYEVIRQ 179
             A +   ++    ED SR+D+DF+ RVIE     GA    FADT+G   P     +++ 
Sbjct: 131 RYARNFTDDIEFSPEDGSRSDIDFLCRVIEAVIKEGATTINFADTVGYGVPGLYGNMLKT 190

Query: 180 LRQEVDIE----LEMHAHNDLGLATANTLAAIN-AGASHVNTTVNGLGERAGNAPLEEVV 234
           LR+ +         +H HNDLG+A AN+LA +   GA  V  T+NGLGERAGN  LEE+V
Sbjct: 191 LRERIPNSDKAVWSVHCHNDLGMAVANSLAGVMIGGARQVECTINGLGERAGNTALEEIV 250

Query: 235 MGLR----HLHGIESQVDTRSLPAISRLVAKASGKAVAPNKSIVGEAVFTHESGIHVDGL 290
           M +R    H + +E  +DT  +   S+LV++ +G AV PNKS+VG   F H SGIH DG+
Sbjct: 251 MAVRTRKDHFN-LEVGIDTTQIVPTSKLVSQITGFAVQPNKSVVGANAFAHASGIHQDGV 309

Query: 291 LKNPANYEHFSPAELG-RSHHIVLGKHSGSRGVKDAFAKMGILL-SDSQAQAMLLRIRD 347
           LK    YE     ++G  ++ IVLGK SG    K    ++GI L S ++  A  +R ++
Sbjct: 310 LKARDTYEIMRAEDVGWTTNKIVLGKLSGRNAFKQRLEELGITLDSGAEMDAAFVRFKE 368


>gi|152979897|ref|YP_001352888.1| 2-isopropylmalate synthase
           [Janthinobacterium sp. Marseille]
          Length = 552

 Score = 68.6 bits (166), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 139/358 (38%), Gaps = 57/358 (15%)

Query: 7   TTLRDGEQTAGVAFTAEEKIAIARALDEIGVPEMEIGIP------------------IMG 48
           T LRDG Q        E+K+     L +IG+ E+E+  P                  I  
Sbjct: 37  TDLRDGNQALIEPMNHEKKLRFFDMLLKIGLKEIEVAFPSASQTDFDFVRKLIDEKRIPD 96

Query: 49  EAEIEVI-QAIAALPLRSKTMVWG------RMCEADLAAAARCNADIVNLS------MPV 95
           +  IEV+ QA   L  R+   V G       M  A   A  R    + N+S      + V
Sbjct: 97  DVTIEVLTQAREDLIRRTVDSVVGSRRAIVHMYNATAPAFRRI---VFNMSKEEVKALAV 153

Query: 96  SDIHIQHKL---QRDRDWVLA-QIRYFLPKALDLGMEVCLGGEDSSRADLDFMLRVIETA 151
           +   +  +L     + +WV       F    LD   EVC    ++ +   +  + +    
Sbjct: 154 AGTKLIRELTDAHPETEWVFQYSPETFSMTELDFAKEVCDAVSEAWQPTPERKMIINLPG 213

Query: 152 QAAGARRFRFADTLGLLDPFATYEVIRQLRQEVDIELEMHAHNDLGLATANTLAAINAGA 211
               +    +AD +  +         R L +   I L +H HND G A A    A+ AGA
Sbjct: 214 TVEASTPNVYADQVEWMH--------RNLARRDSIILSVHPHNDRGCAVAAAELAVMAGA 265

Query: 212 SHVNTTVNGLGERAGNAPLEEVVMGLRHLHGIESQVDTRSLPAISRLVAKASGKAVAPNK 271
             +   + G GER GN  L  + + L +  GI   +D   +  I + V + +   V P  
Sbjct: 266 DRIEGCLFGNGERTGNVDLVTLALNL-YSQGINPGLDFSDIDEIRQCVEECNQIPVHPRH 324

Query: 272 SIVGEAVFTHESGIHVDGLLKNPAN----------YEHFSPAELGRSHHIVLGKHSGS 319
             VG+ V+T  SG H D + K  A           Y    PA+LGRS+  V+  +S S
Sbjct: 325 PYVGDLVYTAFSGSHQDAIKKGFAKQKPDEIWEVPYMPVDPADLGRSYDAVIRVNSQS 382


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 730,993
Number of extensions: 26308
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 3
Length of query: 376
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 291
Effective length of database: 906,776
Effective search space: 263871816
Effective search space used: 263871816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)