BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2323.p
         (642 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981263|ref|YP_001352946.1| chaperone protein HscA [Janthin...   743   0.0  
gi|152980512|ref|YP_001354573.1| molecular chaperone DnaK [Janth...   432   e-122
gi|152980843|ref|YP_001353994.1| Hsp70/DnaK family protein [Jant...    73   6e-14
gi|152980467|ref|YP_001351886.1| rod shape-determining protein M...    57   5e-09

>gi|152981263|ref|YP_001352946.1| chaperone protein HscA
           [Janthinobacterium sp. Marseille]
          Length = 620

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/639 (61%), Positives = 494/639 (77%), Gaps = 20/639 (3%)

Query: 1   MSLLQIAEPGRSTAPHQHRLAVGIDLGTTNSLVATVQSGQARILPDEAGQALLPSVVRYL 60
           M+LLQIAEPG STAPHQHRLAVGIDLGTTNSLVATV++    +L DE G+ALLPSVV Y+
Sbjct: 1   MALLQIAEPGMSTAPHQHRLAVGIDLGTTNSLVATVRNSIPEVLTDEEGRALLPSVVHYM 60

Query: 61  PAHSLQPADRPPTVVGHAAKAAQSDDPRNTLSSIKRLMGRDRADISAGNSADMPYAFIDK 120
                Q        +G+ A AAQ+ DP+NT++S+KR MGR   DI+     ++PY F+D 
Sbjct: 61  KNGHAQ--------IGYKALAAQNTDPKNTIASVKRFMGRGLKDIA--YVENLPYDFLDT 110

Query: 121 PGLVQIDTAAGIKTPIDVSADILRVLRQRAEASLGGELSGAVITVPAYFDDAQRQATKDA 180
           PG+VQ+ T AG+K+P+++SA+IL  LRQ+AE +LG EL GAVITVPAYFDDAQRQATKDA
Sbjct: 111 PGMVQLKTVAGVKSPVEISAEILATLRQQAEDALGDELVGAVITVPAYFDDAQRQATKDA 170

Query: 181 ARLAGLNVLRLLNEPTAAAIAYGLDQAAEGVFAIYDLGGGTFDISILKLSRGVFEVLATN 240
           A+LAGLNVLRLLNEPTAAAIAYGLD  +EGVFA+YDLGGGTFD+SILKL++GVFEVL+T 
Sbjct: 171 AKLAGLNVLRLLNEPTAAAIAYGLDNGSEGVFAVYDLGGGTFDVSILKLTKGVFEVLSTG 230

Query: 241 GDGALGGDDFDRCIHDWVLDQSPLASAGLTSQDTRRLLTAARQAKETLSRETSATIELNL 300
           GD ALGGDDFD  +  W+++Q+ L+   L+ +D   L+  +R+AKE LS +    I+  L
Sbjct: 231 GDSALGGDDFDHRLLCWIIEQAKLSP--LSDEDLSVLMVKSREAKELLSTKAETHIDAAL 288

Query: 301 SSGQAVQLALTREVFASISQGLLARTLLPTRKALRDAGLGVSEIDGVVLVGGSTRMPQVR 360
            SG+ V L +T   F  ++Q L+A+T+ PT+KALRDA L V ++DGVV+VGG+TRMP +R
Sbjct: 289 GSGEEVHLTVTAADFVKMTQHLVAKTITPTKKALRDADLTVDDVDGVVMVGGATRMPHIR 348

Query: 361 AAVADFFGQPPLTDLDPDQVVALGAAMQANVLAGNRQQSD-WLLLDVCPLSLGLETMGGL 419
            AV +FF   PL ++DPD+VVALGAA+QAN+LAGNR   D WLLLDV PLSLG+ETMGGL
Sbjct: 349 KAVGEFFQATPLANIDPDKVVALGAAVQANLLAGNRAAGDDWLLLDVIPLSLGIETMGGL 408

Query: 420 VEKIIPRNSTIPVARAQEFTTFKDGQTAMSVHVLQGERELVADCRSLARLELRGIPPMVA 479
           VEK+IPRNSTIP ARAQEFTTFKDGQTAM++H++QGERELV+DCRSLAR ELRGIPPM A
Sbjct: 409 VEKVIPRNSTIPCARAQEFTTFKDGQTAMAIHIVQGERELVSDCRSLARFELRGIPPMAA 468

Query: 480 GAARIRVTFQIDADGLLSVSAREQSTGVEAAVTVKPSYGLDDANIARMLSEAAGHATDDM 539
           GAARIRVT+Q+DADGLLSVSARE  +GVEA+++VKPSYGL D  IA+ML ++   A  DM
Sbjct: 469 GAARIRVTYQVDADGLLSVSARELRSGVEASISVKPSYGLADDQIAQMLQDSFKSADVDM 528

Query: 540 KMRTLREAQVNARQVADATDAALKRDGHSLLSATEQAHIRQHLYALMELIETAREANDDN 599
            +R LRE QV A ++  AT +AL  DG +LL+  E    R  + +L+  ++ + + +D +
Sbjct: 529 ALRALREEQVEAERIVLATQSALDADG-ALLTDDE----RNAVTSLLAAVQQSSKGDDHH 583

Query: 600 IAALGRACDALNQATQEFAARRMNASVSLALSGQRLDAI 638
             A+  A +AL Q T+EFAARRM+ SV  ALSG++LD I
Sbjct: 584 --AIKAAVEALAQGTEEFAARRMDRSVRTALSGKKLDEI 620


>gi|152980512|ref|YP_001354573.1| molecular chaperone DnaK
           [Janthinobacterium sp. Marseille]
          Length = 650

 Score =  432 bits (1110), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/567 (42%), Positives = 361/567 (63%), Gaps = 32/567 (5%)

Query: 22  VGIDLGTTNSLVATVQSGQARILPDEAGQALLPSVVRYLPAHSLQPADRPPTVVGHAAKA 81
           +GIDLGTTNS VA ++ G+ +++ +  G    PSV+ Y     +        +VG  AK 
Sbjct: 5   IGIDLGTTNSCVAIMEGGKPKVIENSEGARTTPSVIAYQEDGEI--------LVGAPAKR 56

Query: 82  AQSDDPRNTLSSIKRLMGR--DRADISAGNSADMPYAFID-KPGLVQIDTAAGIKTPIDV 138
               +P+NTL ++KRL+GR  D  ++   +   MPY  +    G   I           +
Sbjct: 57  QAVTNPKNTLYAVKRLIGRKFDEKEVQK-DIGMMPYQIVKADNGDAWISVRDKKLAAQQI 115

Query: 139 SADILRVLRQRAEASLGGELSGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAA 198
           SA+ILR +++ AE  LG E++ AVITVPAYF+DAQRQATKDA R+AGL+V R++NEPTAA
Sbjct: 116 SAEILRKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAA 175

Query: 199 AIAYGLDQAAEG--VFAIYDLGGGTFDISILKLS----RGVFEVLATNGDGALGGDDFDR 252
           A+A+GLD+  +G    A+YDLGGGTFDISI++++       FEVL+TNGD  LGG+DFD+
Sbjct: 176 ALAFGLDKGGKGDRKIAVYDLGGGTFDISIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQ 235

Query: 253 CIHDWVLDQSPLASAGLTSQDT---RRLLTAARQAKETLSRETSATIELN-----LSSGQ 304
            I D+++D+    +    S+D    +R+  +A +AK  LS  +S   E+N     +++G 
Sbjct: 236 RIIDYIIDEFKKINGLDLSKDAIALQRIKASAERAKIELS--SSQQTEINEPYIAMANGA 293

Query: 305 AVQLAL--TREVFASISQGLLARTLLPTRKALRDAGLGVSEIDGVVLVGGSTRMPQVRAA 362
            V L L  TR    S+ + L+++T+ P R A++DAG+ VS+ID ++LVGG TRMP+V+  
Sbjct: 294 PVHLNLKITRAKLESLVEELISKTIEPCRTAIKDAGVKVSDIDDIILVGGMTRMPKVQET 353

Query: 363 VADFFGQPPLTDLDPDQVVALGAAMQANVLAGNRQQSDWLLLDVCPLSLGLETMGGLVEK 422
           V DFFG+ P  D++PD+ VA+GAA+Q +VL+G+R+  D LLLDV PLSLG+ET+GG++ K
Sbjct: 354 VKDFFGKDPRKDVNPDEAVAVGAAIQGSVLSGDRK--DLLLLDVTPLSLGIETLGGVMTK 411

Query: 423 IIPRNSTIPVARAQEFTTFKDGQTAMSVHVLQGERELVADCRSLARLELRGIPPMVAGAA 482
           +I +N+TIP   +Q F+T  D Q A+++ V QGERE+    ++L    L GIPP   G  
Sbjct: 412 MIQKNTTIPTKFSQVFSTADDNQPAVTIKVFQGEREMAVGNKALGEFNLEGIPPSARGTP 471

Query: 483 RIRVTFQIDADGLLSVSAREQSTGVEAAVTVKPSYGLDDANIARMLSEAAGHATDDMKMR 542
           +I VTF IDA+G+L V A++++TG E  +T+K + GL +  I +M+ +A  +A +D +++
Sbjct: 472 QIEVTFDIDANGILHVGAKDKATGKENKITIKANSGLTEEEIQKMVQDAEANAEEDKRLK 531

Query: 543 TLREAQVNARQVADATDAALKRDGHSL 569
            L EA      +  +T  AL   G  L
Sbjct: 532 ELAEAHNQGDALVHSTRKALTEYGDKL 558


>gi|152980843|ref|YP_001353994.1| Hsp70/DnaK family protein
           [Janthinobacterium sp. Marseille]
          Length = 416

 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 130/314 (41%), Gaps = 61/314 (19%)

Query: 21  AVGIDLGTTNSLVATVQSGQARILPDEAGQALLPSVVRYLPAHSLQPADRPPTVVGHAAK 80
           A G+D GT+NS V   + G + +L  E G+  LPSVV +        AD      G AA 
Sbjct: 4   ACGVDFGTSNSTVGWSRPGHSALLQLEDGKVTLPSVVFF-------NADEEQVYYGRAAL 56

Query: 81  AA--QSDDPRNTLSSIKRLMGRDRADISAGNSADMPYAFIDKPGLVQIDTAAGIKTPIDV 138
           A   Q  + R  + S+K L+G    D     +  M  A   +  L Q             
Sbjct: 57  ANYLQGYEGR-LMRSLKSLLGTSLID---DQTEVMGKALPFRTLLTQ------------- 99

Query: 139 SADILRVLRQRAEASLGGELSGAVITVPAYFDDAQRQA-------TKDAARLAGLNVLRL 191
               +  L+ RAE + G E S  V+  P YF D   +A         + A+  G   +  
Sbjct: 100 ---FIAELKHRAETAAGREFSSVVMGRPVYFVDGNEEADILAEDTLYEIAQSVGFKDIDF 156

Query: 192 LNEPTAAAIAYGLDQAAEGVFAIYDLGGGTFDISILKLS----RGV---FEVLATNGDGA 244
             EP AAA  Y      E +  I D+GGGT D S+++LS    + V    ++LAT G   
Sbjct: 157 QYEPIAAAFDYESQIDKEELVLIADIGGGTSDFSLVRLSPERAKKVDRRDDILATGGI-H 215

Query: 245 LGGDDFDRCIHDWVLDQSPLASAGLTSQDTRRLLTAARQAKETLSRETSATIELNLSSGQ 304
           +GG DFD+ +   +    PL   G            +R    T   E  ++   NL++  
Sbjct: 216 IGGTDFDKYLS--LTSIMPLLGLG------------SRLNNNT---EVPSSYYFNLATWH 258

Query: 305 AVQLALTREVFASI 318
            + LA T++ +  I
Sbjct: 259 TINLAYTQKAWLQI 272


>gi|152980467|ref|YP_001351886.1| rod shape-determining protein MreB
           [Janthinobacterium sp. Marseille]
          Length = 347

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 15/231 (6%)

Query: 162 VITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDQAAEGVFAIYDLGGGT 221
           +I VP      +R+A +++A  AG   + L+ EP AAAI  GL  +      + D+GGGT
Sbjct: 112 IICVPCGSTQVERRAIRESALGAGAAQVYLIEEPMAAAIGAGLPVSDATGSMVVDIGGGT 171

Query: 222 FDISILKLSRGVFEVLATNGDGALGGDDFDRCIHDWVLDQSPLASAGLTSQDTRRLLTAA 281
            ++ I+ L   V++     G   +GGD FD  I +++     +     T++  ++ + +A
Sbjct: 172 TEVGIISLGGMVYK-----GSIRVGGDKFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGSA 226

Query: 282 RQAKETLSRETSATIELNLSSGQAVQLAL-TREVFASISQGLLARTLLPTRKALR----D 336
               E    E       NLS G      + + E+  +++   L   +   + AL     +
Sbjct: 227 FPGSEVREMEVKGR---NLSEGIPRSFTISSNEILEALTD-PLNNIVSAVKNALEQTPPE 282

Query: 337 AGLGVSEIDGVVLVGGSTRMPQVRAAVADFFGQPPLTDLDPDQVVALGAAM 387
            G  ++E  G++L GG   +  +   + +  G P +   DP   V  G+ M
Sbjct: 283 LGADIAE-KGMMLTGGGALLRDLDRLLMEETGLPVIVAEDPLTCVVRGSGM 332


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,425,864
Number of extensions: 60646
Number of successful extensions: 249
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 4
Length of query: 642
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 553
Effective length of database: 891,988
Effective search space: 493269364
Effective search space used: 493269364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)