BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2322.p
         (106 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981602|ref|YP_001352944.1| [Fe-S] cluster formation/repair...   151   8e-39
gi|152981570|ref|YP_001351989.1| iron-sulfur cluster insertion p...    69   5e-14

>gi|152981602|ref|YP_001352944.1| [Fe-S] cluster formation/repair
           protein [Janthinobacterium sp. Marseille]
          Length = 107

 Score =  151 bits (381), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 66/107 (61%), Positives = 84/107 (78%), Gaps = 1/107 (0%)

Query: 1   MSITLTENAARRVHAFLAKR-SAVGLRLAVKTSGCSGMAYALEYADVAEPQDVRFESHGV 59
           M+ITLTE AA+ +  ++ +R   +GLR  V+T+GCSG+AY LEY D +  +D  FESHG+
Sbjct: 1   MAITLTEKAAKHITRYMERRGKGIGLRFGVRTTGCSGLAYKLEYVDESANEDSVFESHGI 60

Query: 60  TVLIDPKSLPYLDGTELDFVREGLNEGFKFNNPNAKNQCGCGESFAV 106
            V +DPKSLPY+DGTELDF REGLNEGFKF NPN K++CGCGESF +
Sbjct: 61  KVFVDPKSLPYIDGTELDFAREGLNEGFKFRNPNVKDECGCGESFRI 107


>gi|152981570|ref|YP_001351989.1| iron-sulfur cluster insertion
           protein ErpA [Janthinobacterium sp. Marseille]
          Length = 116

 Score = 69.3 bits (168), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 3   ITLTENAARRVHAFLAKRS--AVGLRLAVKTSGCSGMAYALEYADVAEPQDVRFESHGVT 60
           I  +++AA +V   + +     + LR+ V+  GCSG  Y   + ++    D     +GV 
Sbjct: 11  IVFSDSAAMKVAELIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMTKNGVQ 70

Query: 61  VLIDPKSLPYLDGTELDFVREGLNEGFKFNNPNAKNQCGCGESFA 105
           +LID  S  YL G E+D+  +     F   NPNA   CGCG SF+
Sbjct: 71  LLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFS 115


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 235,128
Number of extensions: 8431
Number of successful extensions: 12
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 2
Length of query: 106
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 36
Effective length of database: 962,231
Effective search space: 34640316
Effective search space used: 34640316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)