BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2312.p
         (291 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981461|ref|YP_001354518.1| transcriptional regulator [Jant...   101   5e-23

>gi|152981461|ref|YP_001354518.1| transcriptional regulator
           [Janthinobacterium sp. Marseille]
          Length = 841

 Score =  101 bits (252), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 129/276 (46%), Gaps = 25/276 (9%)

Query: 33  FASIRFSPHETSAPASRADTRRWLVTIQK--EGEASVSQGGRHSHLRPGDMVLIDLGSPF 90
           FA +  SP    +P      R  +V I    EG+  +S G   + +  GD+ L++    +
Sbjct: 73  FAKLHGSPQILHSPQDAVGKRNDVVLILALLEGQGQLSVGPESARMNAGDIFLVNPQQDW 132

Query: 91  RIE--TGHMVTHSTYVDSELLKRVMPDADRRTAV----RIETACGPGAIFRAMSDEMFEM 144
           R+E  T          ++  L R+M     RT      R+ T  G G I    +D ++ +
Sbjct: 133 RLELQTAFTAILIELKEAGFLARLM-----RTGASDLNRVVTNHGAGGI---SADFLYSI 184

Query: 145 ATELDENTAARIAQ--ALPYSLAIA--LSHCDKEMMACP-----SRLQLFHLERIRAFVR 195
               D  +   + Q  A   SL IA    + D E  + P     + +QL HL R+   + 
Sbjct: 185 GEHFDGLSPEDLGQMEASLTSLLIAGMARNGDAEEASDPDAEHSTSVQLGHLRRVCRSIE 244

Query: 196 DNLHDSSLDAEMISQAVQLSTRHIYQLFTAEQTSLMKWVWSERLERCREDLVSRQLSNRP 255
           + L D  +    I++   LS R+I +LF    T+  ++V   RL+RCR DL +  L +  
Sbjct: 245 NRLTDPEVSISEIARIENLSARYIQKLFAGGDTTFGEYVKKRRLDRCRNDLANSALKHLT 304

Query: 256 IGEIAYGWGFSDVAHFSRAFKEKFNMTPRAYRKMHG 291
           I E+ + WGF+D A+FSRAF  +F ++P+AYR   G
Sbjct: 305 ICELCFRWGFNDAANFSRAFNLEFGISPKAYRASAG 340


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 619,026
Number of extensions: 22617
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 209
Effective length of database: 917,867
Effective search space: 191834203
Effective search space used: 191834203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)