BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2311.p (370 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinob... 101 8e-23 gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Ma... 80 2e-16 gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Ma... 80 3e-16 gi|152981718|ref|YP_001352190.1| porin [Janthinobacterium sp. Ma... 74 1e-14 gi|152981746|ref|YP_001351981.1| porin [Janthinobacterium sp. Ma... 72 4e-14 >gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinobacterium sp. Marseille] Length = 364 Score = 101 bits (251), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 120/391 (30%), Positives = 174/391 (44%), Gaps = 53/391 (13%) Query: 5 RRQSAAIAALALWPAATWAQSSVSISGIMDGGVSYVS--NQAGSSNLRADNGIGAPNILF 62 ++ A+A L + A AQSSV++ GI+D G ++V N AGS N G A I F Sbjct: 2 KKSLLALAVLGAFAGAASAQSSVTVYGIVDLGFAHVDDGNPAGSKNGIDSGGQSASRIGF 61 Query: 63 IKGQEDLGGGTAAIFQLESQFNLST--------------GASLPGNNLIFGRQSLVGLKD 108 KG EDLG G A+FQLE+ T A + N F R + VGL+ Sbjct: 62 -KGTEDLGNGLKALFQLEATLQADTGAGFGAAAAPATGFNAGVANNAGGFNRFATVGLQS 120 Query: 109 KQWGTLTAGNQYEFMHDSLLFGGFDSALTYGGYYTFRQGPFSALAIPNNPTGASDFDRVA 168 +GT+ G Q + D+ +D +G T G S + N A D+ Sbjct: 121 AAFGTVLLGRQTSVIKDA-----YDQIDPFGDGGTV--GAISTVFF--NGVLAGDY---- 167 Query: 169 GSSRVANSVKYLSPDVSGVTFGGMYGFGEVAGDTASSRTVSLGANYAEGPFGLGVAYTDA 228 R++NS KY S G FG YGFGE GDT ++ LG YA GP + AY + Sbjct: 168 --GRISNSAKYQSNSFGGFKFGAAYGFGETPGDTGANSNYGLGLGYANGPLNVQFAYHNQ 225 Query: 229 RYSSMNSGH----DGIRNWGLGARYQIGDYKLNLLYTNTRNTQTAGQVNV-YQAGVNWQM 283 S++ + +G + LGA Y G KL+ Y +T+ + V Y+ N+ + Sbjct: 226 DRSTVANPSVQQAEG-KLMLLGATYDFGVVKLHGAYGDTKLENSVANTEVKYR---NYML 281 Query: 284 AVAWNLGLSYEY----MQGNAQLANNYAHQGSATLQYWLSKRTDVYLQTVYQKAGGDNTN 339 V+ +G + N + N A + + + Y LSKRT++Y T Y K D+ + Sbjct: 282 GVSAPVGPGTIFASYTANDNRSVDNADAKKFAISYSYDLSKRTNLY--TGYSKTSNDDGS 339 Query: 340 TQAWINGLYGPKAMSSSSSQAIFRVGLVTRF 370 G P S+S IF VG+ +F Sbjct: 340 RIGLNAG--APVGESAS----IFNVGIRHKF 364 >gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Marseille] Length = 326 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 95/339 (28%), Positives = 146/339 (43%), Gaps = 50/339 (14%) Query: 1 MKKYRRQSAAIAALALWPAATWAQSSVSISGIMDGGVSYVSNQAGSSNLRADNGIGAPNI 60 MK + Q A+AA+ A+ AQSSV + G++D ++Y + +NG + Sbjct: 1 MKAFAMQGLALAAMLACGTASQAQSSVQVYGLIDVALAYDKQPGKAGVTGVENGKMTTSY 60 Query: 61 LFIKGQEDLGGGTAAIFQLESQFNLSTGAS--LPGNNLIFGRQSLVGLKDKQWGTLTAG- 117 L +KG EDLGGG + IF LES F TG++ G+ + R S VGL+ + +G++ G Sbjct: 61 LGLKGSEDLGGGLSTIFALESYFRADTGSNGRFDGDGF-WTRSSYVGLQGR-FGSVRLGR 118 Query: 118 NQYEFMHDSLLFGGFDSALTYGGYYTFRQGPFSALAIPNNPTGASDF--DRVAGSSRVAN 175 N +LLF F + Y +P+ F V G S ++ Sbjct: 119 NSVPLFISTLLFNPFGDSFGY------------------SPSIRHYFASGTVTGDSGWSD 160 Query: 176 SVKYLSPDVSGVTFGGMYGFGEVAGDTASSRTVSLGANYAEGPFGLGVAYTDARYSSMNS 235 S+ Y+SP+ SG+T + GE G +V Y +GP GL Y R + + Sbjct: 161 SIAYVSPNFSGLTVNLIAAAGEGNGGPNVGGSVL----YTKGPLGLTAVYQRVRKGAAIA 216 Query: 236 GHDGIRNWGLGARYQIGDYKLNLLYTNTRNTQTAGQVNVYQAGVNWQMAVAWNLGLSYEY 295 W LG+ Y K+ Y +N Q + +++ +LG++ Sbjct: 217 ---DTTTWQLGSSYDFDVVKVFAQYGQVKNVSA-------QPDIEYKLT---DLGVAIPL 263 Query: 296 MQGNAQLANNY------AHQGSATL--QYWLSKRTDVYL 326 G A A + + +L Y LSKRTDVYL Sbjct: 264 GGGKVLAAYGLLDPVVGAKRETLSLGYDYNLSKRTDVYL 302 >gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Marseille] Length = 327 Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 97/365 (26%), Positives = 161/365 (44%), Gaps = 48/365 (13%) Query: 10 AIAALALWPAATWAQSSVSISGIMDGGVSYVSNQAGSSNLRADNGIGAPNILFIKGQEDL 69 A + LA AT+ QSSV++ G++D G+ + N + D+G + + + KG EDL Sbjct: 7 AFSMLASMAGATYGQSSVTVYGVVDLGLK-IENAGNGTVTGIDSGNQSVSRVGFKGTEDL 65 Query: 70 GGGTAAIFQLESQFNLSTGASLPGNNLIFGRQSLVGLKDKQWGTLTAGN-QYEFMHDSLL 128 G G A F LE+ FN +G+ F RQS V L +G + G Q +S + Sbjct: 66 GNGLKANFVLEAGFNADSGSQSDATRF-FNRQSYVSLA-GGFGEVKLGRVQTMVFTNSAV 123 Query: 129 FGGFDSALTYGGYYTFRQGPFSALAIPNNPTGASDFDRVA--GSSRVANSVKYLSPDVSG 186 F PF+ T A D R+ G +R+ N+V Y +G Sbjct: 124 F-----------------DPFA-------DTLAGDSVRIFNYGGNRIDNTVNYSFAAKNG 159 Query: 187 VTFGGMYGFGEVAGDTASSRTVSLGANYAEGPFGLGVAYTDARYSSMNSGHDGIRNWGLG 246 + Y FGEVAG+T++SRTV+ YA GP + Y D + +G+D + +G Sbjct: 160 INGQAAYSFGEVAGNTSASRTVAGAIGYASGPLATVLTYQDTKDV---TGNDSAKTTLIG 216 Query: 247 ARYQIGDYKLNLLYTNTRNTQTAGQVNVYQAGVNWQMAVAWNLGLSYEYMQGNAQLANNY 306 Y G + + Y + G ++ A + ++ + + YMQ ++ +N Sbjct: 217 GNYNFGLLQPFIAYAVNKG---FGTLDTRDALLGLKINLTSADTIMTSYMQKRDKVIDNA 273 Query: 307 -AHQGSATLQYWLSKRTDVYLQTVYQKAGGDNTNTQAWINGLYGPKAMSSSSSQAIFRVG 365 A Q + + LS RT++Y T + + D+ N Y + S+ + +F +G Sbjct: 274 DAKQIAIGYTHNLSVRTNLY--TSWARLSNDD-------NAAY--RVTSAGKTDKLFNIG 322 Query: 366 LVTRF 370 + +F Sbjct: 323 IRHKF 327 >gi|152981718|ref|YP_001352190.1| porin [Janthinobacterium sp. Marseille] Length = 364 Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 112/374 (29%), Positives = 158/374 (42%), Gaps = 65/374 (17%) Query: 1 MKKYRRQSAAIAALALWPAATWAQSSVSISGIMD---GGVSYVSNQAGSSNLRADNGIGA 57 ++K + +A AA AL PA AQ+SV ++G++D G V Y S AG S++ G+ Sbjct: 8 LRKLQCVAALGAACAL-PA--MAQTSVQVTGLVDNFIGSVKY-SGDAGRSSVVNSGGMTT 63 Query: 58 PNILFIKGQEDLGGGTAAIFQLESQFNLSTGAS--LPGNNLIFGRQSLVGLKDKQWGTLT 115 F KG EDLGGG A F L S F TG + GN F R + VGL K +G ++ Sbjct: 64 SWFGF-KGTEDLGGGLKAKFNLTSFFRADTGGAGRFDGNETFFSRDANVGLIGK-FGEIS 121 Query: 116 AGNQY-EFMHDSLLFGGFDSALTYGGYYTFRQGPFSALAIPNNPTGASDFDRVAGSSRVA 174 G S+LF F +F+ P A G+ + VA + + Sbjct: 122 LGRDLAPHFLPSILFNPFGD--------SFQLSPLMLHADVPLFNGSRWSNSVAADTGWS 173 Query: 175 NSVKYLSPDVSGVTFGGMYGFGEVAGDTASSRTVSLGANYAEGPFGLGVAYTDARY---- 230 N + Y +P+++G+ Y FGEVAG + + V + Y+ GP GL Y R Sbjct: 174 NEIIYTTPNMAGLKANIHYQFGEVAGQSGKN-NVGMNLLYSNGPLGLAAYYQKIRVNNPL 232 Query: 231 ----------SSMNSGHDGIRN--WGLGARYQIGDYKLNLLYTNTRNTQTAGQVNVYQAG 278 +++ G R W +G Y KL Y QT+ V++ Sbjct: 233 EQTPGNVLPAATLLGGLTPARQTGWFVGGSYDFAVAKLFATY-----NQTSHDVDLQDRT 287 Query: 279 VNWQMAVAWNLGLSYEYMQGNAQLAN--NYAHQGSATLQ------------YWLSKRTDV 324 V LG S QG A LA+ N G+A Q Y +SKRTD+ Sbjct: 288 V--------QLGTSIPLGQG-AILASWANTKRDGAAIGQDLKRNTASFGYDYNISKRTDL 338 Query: 325 YLQTVYQKAGGDNT 338 Y +Y K NT Sbjct: 339 YAVYMYDKITQQNT 352 >gi|152981746|ref|YP_001351981.1| porin [Janthinobacterium sp. Marseille] Length = 395 Score = 72.4 bits (176), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 94/328 (28%), Positives = 138/328 (42%), Gaps = 36/328 (10%) Query: 19 AATWAQSSVSISGIMDGGVSYVSN--QAGSSNLR-ADNGIGAPNILFIKGQEDLGGGTAA 75 A T QS+++I G +D G+ V+N + G L+ NG N + IKG EDLGGG A Sbjct: 52 AGTNYQSTINIYGTIDAGIRNVTNTTKNGGDTLKMGSNGEYYNNRIGIKGTEDLGGGLNA 111 Query: 76 IFQLESQFNLSTGASLPGNNLIFGRQSLVGLKDKQWGTLTAGNQYEFMHDSLLFGGFDSA 135 F LE+ FN TGA F R S VG+ +G++ G ++ +D Sbjct: 112 HFHLETGFNTGTGALDNNAGRFFNRISSVGVAGS-FGSIDFGRMPSVSCKTIF--AYDPF 168 Query: 136 LTYGGYYTFRQGPFSALAIPNNPTGASDFD-RVAGSSRVANSVKYLSPDVSGVTFGGMYG 194 Y + P + + N A F G +R +N V+Y+ VT + Sbjct: 169 Q----YRYVQIVPLAGASAGNADGNAPGFPWGTIGGTRFSNDVQYIG-KFDNVTILAEFS 223 Query: 195 FGEVAGDTASSRTVSLGANYAEGPFGLGVAYTDARYS---SMNSGHDGIRNWGLGARYQI 251 GEV+G +S ++G Y GPF +G AYT + + + + G YQ Sbjct: 224 TGEVSGSNSSGSAQAVGMTYRPGPFVIGAAYTRQKPNVSITATPEYQQQNQVTFGGAYQA 283 Query: 252 GDYKLNLLYTNTRNTQTAGQVNVYQAGVNWQMAVAWNLGLSYEYMQG--------NAQLA 303 ++ Y NT TA Q G+N Q +W +G SY++ LA Sbjct: 284 DGLRIAGGYINTE-ADTAVQ------GINNQAKNSW-IGASYDFTPAVSVTTGFYRTTLA 335 Query: 304 NNYAHQGSATL-----QYWLSKRTDVYL 326 + S L Y LS RT++YL Sbjct: 336 TGNVEKASRNLLIVGATYALSTRTNLYL 363 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.131 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 908,444 Number of extensions: 41822 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 9 Length of query: 370 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 285 Effective length of database: 906,776 Effective search space: 258431160 Effective search space used: 258431160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)