BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2310.p (423 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982790|ref|YP_001353557.1| major facilitator transporter [... 86 5e-18 gi|152982449|ref|YP_001355163.1| major facilitator superfamily o... 78 1e-15 gi|152982869|ref|YP_001355198.1| major facilitator superfamily o... 72 7e-14 >gi|152982790|ref|YP_001353557.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 426 Score = 85.5 bits (210), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 104/405 (25%), Positives = 166/405 (40%), Gaps = 23/405 (5%) Query: 22 GWVVVLASMVALMFGPSTVAVLSL-GLFIRPLEADFGWSRTQIALASSIVSYTVMLISPI 80 WV+V + + ++ ++ A L L G+ ++PL +FGWS QI+ A ++ I P Sbjct: 18 SWVIVAITFLTML---TSSAALGLPGVLLQPLSKEFGWSNDQISSAVAVRYVLFGFIGPF 74 Query: 81 QGYLTDRFGARAVIVPCIPLFCVAVGLMYFMPPVPWIYYAAWIALPVIGIGIFPLSYLRV 140 +RFG R VI + L + L M + ++ + L + V Sbjct: 75 AAIFMERFGLRKVITIALVLVAACLALSTMMTELWQMFLLWGLLLGTGTGLTALVLGAVV 134 Query: 141 VSSWFDKRLGLAIGIANAGIGIGGAVIPLLIGAVIAHQGWRAGFVGLSALVALTLPLAYA 200 + WF+KR GL +G+ A G + +I + GWR + + A LA+ Sbjct: 135 ANRWFEKRRGLVLGLLTASSATGQLIFLPFGAWLIQNYGWRMSVIPVFLCCAAVAVLAFL 194 Query: 201 FIREK------------PGTEP-----KKGRVQTVPGVDFKTALRSREFKLLIGIFLLLG 243 +R++ PG+EP P ++A R+R F +L G F + G Sbjct: 195 LVRDRPHDVGAVAYGAAPGSEPPPLPATAQMTMMEPFRVLRSASRNRTFWVLAGTFFICG 254 Query: 244 VINTALI-VHQMPMLMDAGVTPQRAAMVQATFGIFVIAGRLLTGLLID-YISAVLVMCFL 301 + + LI H + + D G+ AA V A G F G +L+G L D Y + L+ + Sbjct: 255 LSTSGLIQTHFVSLCGDYGMAAIPAASVLAMMGAFDFIGTILSGWLSDRYDNRKLLFWYY 314 Query: 302 VLGGTIACSLYAYGVTGNVVFLCAALLGMVLGAEFDVLSYLLKRYFGMRAFGKLYGVIFS 361 L G L T + L A G+ A V L FG G ++G IF+ Sbjct: 315 GLRGLSLIWLPHSEFTLYGLSLFAMFYGLDWFATVPVTVKLAGAEFGKERAGMVFGWIFT 374 Query: 362 VFQFGAGAGAALLPLMRQASGSYRSGLTTFAIATLTCALLLIVLH 406 Q G A L R +Y L IA L A+++ ++ Sbjct: 375 AHQIGGAFAAYGAGLSRTILMAYTPALYAAGIACLFAAVIVFMIK 419 >gi|152982449|ref|YP_001355163.1| major facilitator superfamily oxalate/formate antiporter [Janthinobacterium sp. Marseille] Length = 441 Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 101/385 (26%), Positives = 170/385 (44%), Gaps = 44/385 (11%) Query: 47 LFIRPLEADFGWSRTQIALASSIVSYTVMLISPIQGYLTDRFGARAVIVPCIPLFCVAVG 106 LF+ ++ FGW+R +I +A +I ++PI+GY D+ G R ++ + +G Sbjct: 43 LFVPEIQGTFGWARAEIQIAFTIFVLVQTWLAPIEGYFIDKLGPRLMV----AFGAIFIG 98 Query: 107 LMYFMPPVPWI---YYAAWIALPVIGIGIFPLSYLRVVSSWFDKRLGLAIGIANAGIGIG 163 L +++ +Y V I+ + + WF R GLA+G+ G G G Sbjct: 99 LAWYINSQASTLMGFYVGAALGGVGVGSIYA-TCINNALKWFPDRRGLAVGLTAGGYGAG 157 Query: 164 GAVIPLLIGAVIAHQGWRAGFVGLSALVALTLPLAYAFIREKPGTEPKKGR--VQTVPGV 221 A L I A+I G++ F+ L +A F+R E K VQ Sbjct: 158 SAATILPIAAMIESSGFQETFLFFGILQGSLAFVAAWFLRSPAKGEVKASAKLVQATRDY 217 Query: 222 DFKTALRSREFKLLIGIFLLLGVINTALIVHQMPML-MDAGVTPQRAAM---VQATFGIF 277 K AL ++ F L+ +F+ + V + V Q+ ++ D GV + V A + Sbjct: 218 TLKEALNTKLFWLMFFMFICV-VTGGMMAVAQLGVIAQDLGVKEFEVDLHFFVMAALPLA 276 Query: 278 VIAGRLLTGL---LIDYIS------AVLVMCFLVLG------GTIACSLYAYGVTGNVVF 322 ++ R++ G+ L +IS +V+ F + G G + +A+ + VVF Sbjct: 277 LMLDRIMNGISRPLFGWISDNIGREKTMVIAFTLEGFGIIALGYFGHNPWAFLILSGVVF 336 Query: 323 LCAALLGMVLGAEFDVLSYLLKRYFGMRAFGKLYGVIFSVFQFGAGAGAALLP---LMRQ 379 L G + + S L FG + GK+YGV+++ G GA +P LM + Sbjct: 337 LA-------WGEVYSLFSALAGDAFGTKHIGKIYGVLYT----AKGIGALFVPVGNLMME 385 Query: 380 ASGSYRSGLTTFAIATLTCALLLIV 404 A+G++ + L T A LT A+L IV Sbjct: 386 ATGTWSTVLYTVACMDLTAAILAIV 410 >gi|152982869|ref|YP_001355198.1| major facilitator superfamily oxalate/formate antiporter [Janthinobacterium sp. Marseille] Length = 430 Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 16/230 (6%) Query: 20 YRGWVVVLASMVALMFGPSTVAVLSLG--LFIRPLEADFGWSRTQIALASSIVSYTVMLI 77 YR W+ ++ +VA+ + +A L G LF+ P+ A GWSR I +A +I T + Sbjct: 19 YR-WMQLILGIVAM----AMIANLQYGWTLFVDPIAAKHGWSRAAIQVAFTIFVLTETWL 73 Query: 78 SPIQGYLTDRFGARAVIVPCIPLFCVAVGLMYFMPPVPWIYYAAWIALPVIGIGIFPLSY 137 PI+G+ D+FG R V++ L + + F + +Y+AA I+ IG G + Sbjct: 74 VPIEGWFVDKFGPRPVVLVGGILCGLGWFINSFADSLATLYFAAVIS--GIGAGAVYGTC 131 Query: 138 LRVVSSWFDKRLGLAIGIANAGIGIGGAVIPLLIGAVIAHQGWRAGFVGLSALVALTLPL 197 + WF R GLA G+ AG G G AV + I A+IA +G++ F+ + + L Sbjct: 132 VGNALKWFPDRRGLAAGLTAAGFGAGSAVTIIPISAMIATRGYQDAFLYFGIGQGIIVVL 191 Query: 198 AYAFIREKPGTEPKKGRV-----QTVPGVDFKTALRSREFKLLIGIFLLL 242 F+ P E KKG QT LR F ++ +F+++ Sbjct: 192 VALFLTRAP--EHKKGDAVANVQQTKRDYKPSEVLREPVFWIMYAMFVMV 239 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.330 0.145 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 874,818 Number of extensions: 33300 Number of successful extensions: 182 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 7 Length of query: 423 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 337 Effective length of database: 903,079 Effective search space: 304337623 Effective search space used: 304337623 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)