BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2308.p
         (628 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980945|ref|YP_001354225.1| selenocysteine lyase [Janthinob...   878   0.0  
gi|152980888|ref|YP_001352942.1| cysteine desulfurase [Janthinob...   103   3e-23

>gi|152980945|ref|YP_001354225.1| selenocysteine lyase
           [Janthinobacterium sp. Marseille]
          Length = 653

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/635 (70%), Positives = 500/635 (78%), Gaps = 32/635 (5%)

Query: 21  APFDPALLARLANELFAAPAAPVWSPGQVPGAQPPANFTPPASPLSSPAGTSQGVPGTAI 80
           AP DPA+LAR+A+  F A   P      +PG Q P N  PP SPL+SPAG    VPGT I
Sbjct: 16  APIDPAVLARMASAFFTA--LPNQGAPSLPGIQAPVNLAPPGSPLASPAGFGPAVPGTPI 73

Query: 81  PQGLAPGLNLIPSSPHQVLTLGNRAPALAPAAPAGNGTPDKVFAALPAYEPRVGGAVTGA 140
           PQG  PG NL+P+SP Q+ +L NRAPAL P A A NG PD V + LPAYEPR+GGAV G 
Sbjct: 74  PQGQIPGSNLLPASPAQLPSLANRAPALLPHASAPNGVPDTVISTLPAYEPRLGGAVLGV 133

Query: 141 PQAVAAAPA-AAPSTAGYYFLDDGHGHPRG---GASTA---------PTAAPAV------ 181
           PQA A +P  A+ +T+ YYFL  G     G   G  TA         P AAP        
Sbjct: 134 PQATAPSPQLASENTSPYYFLQQGPASATGRDTGPVTASILDQLAHQPFAAPVTGQKPQT 193

Query: 182 ------PASTSQYYFLHAVELPSGYVTPAKPAPHAVHQPAGAQQT-----AAFDVHAVRR 230
                 P++  +YYF+ +V LP+GYVTPAK  PH   Q  G  Q       AFDVHAVRR
Sbjct: 194 PASAPQPSTEPKYYFVDSVVLPNGYVTPAKAHPHGDAQATGIPQADQSRHPAFDVHAVRR 253

Query: 231 DFSILQERVNGRPLVWFDNAATTHKPQAVIDRISEFYRRENSNIHRAAHELAARATDAYE 290
           DF ILQERVNGR LVWFDNAATTHKPQ+VIDRI+ FY  ENSNIHRAAHELAARATDAYE
Sbjct: 254 DFPILQERVNGRQLVWFDNAATTHKPQSVIDRIAYFYEHENSNIHRAAHELAARATDAYE 313

Query: 291 GARERVRAFLNAPDVNEVIFVRGTTEAINLVAKSWGGKHVGAGDEIIVSHLEHHANIVPW 350
           GAR+RV+ F+NAPDVNEVIFVRGTTEAINLVAKSWGG+HVG GDEIIVS+LEHHANIVPW
Sbjct: 314 GARQRVKNFINAPDVNEVIFVRGTTEAINLVAKSWGGQHVGEGDEIIVSNLEHHANIVPW 373

Query: 351 QQLAAEKGAKLRVIPVDDSGQVLLDEYAKLLNERTRIVAVTQVSNALGTVTPTKQIVELA 410
           QQLAA KGAKLRVIPVDDSGQV+L EY KLLN+RT+IVAVTQVSNALGTV P K+IV LA
Sbjct: 374 QQLAAAKGAKLRVIPVDDSGQVILSEYQKLLNDRTKIVAVTQVSNALGTVVPVKEIVALA 433

Query: 411 RLAGARTLVDGAQSVSHMRTDVQALGADFFVFSGHKVFGPTGIGALWGRREVLEDMPPWQ 470
             AGA+ LVDGAQS+SHMR DVQ +GADFFVFSGHKVFGPTGIG +WG+RE+LEDMPPWQ
Sbjct: 434 HRAGAKALVDGAQSISHMRVDVQDIGADFFVFSGHKVFGPTGIGVVWGKREILEDMPPWQ 493

Query: 471 GGGNMIADVTFEKTIFQPLPNTFEAGTGNIADAVGLGAAIDYVNRIGIDNIASYEHALLE 530
           GGGNMIADVTFEKT+FQP+PN FEAGTGNIADAVGLGAAIDYVN++GI+NIA YEH LL 
Sbjct: 494 GGGNMIADVTFEKTVFQPIPNKFEAGTGNIADAVGLGAAIDYVNKVGIENIARYEHELLV 553

Query: 531 YGMHKLGEVDGLRLIGTAAHKASVMSFVLDGYSTEEVGKALNQEGIAVRTGHHCAQPILR 590
           YGM KLG + G+RLIGTAA KASVMSFVL GY+TEEVG ALN EGIAVRTGHHCAQPILR
Sbjct: 554 YGMQKLGAIPGVRLIGTAADKASVMSFVLQGYTTEEVGHALNDEGIAVRTGHHCAQPILR 613

Query: 591 RFGVETTVRPSLAFYNTFEEIDCLLTVVRRLSAQR 625
           RFGVETTVRPSLAFYNTF+EID L+ VV RL++QR
Sbjct: 614 RFGVETTVRPSLAFYNTFDEIDRLVAVVTRLASQR 648


>gi|152980888|ref|YP_001352942.1| cysteine desulfurase
           [Janthinobacterium sp. Marseille]
          Length = 417

 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 109/217 (50%), Gaps = 2/217 (0%)

Query: 245 VWFDNAATTHKPQAVIDRISEFYRRENSNIHRAAHELAARATDAYEGARERVRAFLNAPD 304
           ++ D +ATT     V D++  + R +  N    +H     A  A E ARE+V A +NA D
Sbjct: 20  IYMDYSATTPIDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEDAREQVAALVNA-D 78

Query: 305 VNEVIFVRGTTEAINLVAKSWGGKHVGAGDEIIVSHLEHHANIVPWQQLAAEKGAKLRVI 364
             E+I+  G TE  NL  K     +   G  II    EH A +   ++L   +G +   +
Sbjct: 79  PREIIWTSGATEGNNLALKGAAQFYKTKGKHIITVKTEHKAVLDTVRELE-RQGFEATYL 137

Query: 365 PVDDSGQVLLDEYAKLLNERTRIVAVTQVSNALGTVTPTKQIVELARLAGARTLVDGAQS 424
              D+G + +++ A+ +   T +V+V  V+N +G + P  +I EL R  G     D AQ+
Sbjct: 138 QPQDNGLITIEQLAEAIRPDTILVSVMLVNNEIGVIQPIDEIGELCRSKGIIFHCDAAQA 197

Query: 425 VSHMRTDVQALGADFFVFSGHKVFGPTGIGALWGRRE 461
              ++ D++    D   F+ HK +GP GIGAL+ RR+
Sbjct: 198 TGKVKIDLEKSKVDLMTFTAHKTYGPKGIGALYVRRK 234


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,480,720
Number of extensions: 64688
Number of successful extensions: 256
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 2
Length of query: 628
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 539
Effective length of database: 891,988
Effective search space: 480781532
Effective search space used: 480781532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)