BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2304.p
         (168 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982292|ref|YP_001354228.1| hypothetical protein mma_2538 [...   184   3e-48
gi|152980622|ref|YP_001352766.1| hypothetical protein mma_1076 [...   100   9e-23
gi|152982263|ref|YP_001352144.1| hypothetical protein mma_0454 [...    66   1e-12

>gi|152982292|ref|YP_001354228.1| hypothetical protein mma_2538
           [Janthinobacterium sp. Marseille]
          Length = 228

 Score =  184 bits (466), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 94/131 (71%), Positives = 105/131 (80%), Gaps = 1/131 (0%)

Query: 37  GLPYAGGIGPQQAWELVAAGKVVLVDVRTAEERKFVGHVPHSLHVAWATGTSLSRNPRFV 96
           GL    G+ PQ AW+L ++GK VLVDVRTAEER FVG+VP S+HVAWATGTSL+RNPRFV
Sbjct: 98  GLLSKDGVTPQLAWQLFSSGKAVLVDVRTAEERAFVGYVPDSIHVAWATGTSLTRNPRFV 157

Query: 97  RELESKLGGKDVPALLLCRSGKRSVAAAEAATKAGLTCIFNVLEGFEGELDASQQRGKAD 156
           RELE+K  GKD   LLLCRSGKRS  AA+AA KAG T +FNVLEGFEGELD  Q RG  D
Sbjct: 158 RELEAK-TGKDKTILLLCRSGKRSALAADAAQKAGFTRVFNVLEGFEGELDEQQHRGVND 216

Query: 157 GWRFHGLPWVQ 167
           GWR+H LPWVQ
Sbjct: 217 GWRYHQLPWVQ 227


>gi|152980622|ref|YP_001352766.1| hypothetical protein mma_1076
           [Janthinobacterium sp. Marseille]
          Length = 154

 Score = 99.8 bits (247), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 26  LAQIRAQAMADGLPYAGGIGPQQAWELVAAG-KVVLVDVRTAEERKFVGHV--PHSLHVA 82
           LA  + +   + LPYAG + PQ+A+ L+ +   V LVDVRT  ER ++G V  P   H+A
Sbjct: 8   LAAAQQRGKDNALPYAGALTPQEAYALLQSDPNVKLVDVRTNAERDWIGRVAIPAEQHLA 67

Query: 83  --WATGTSLSRNPRFVRELESKLGGKDVPALLLCRSGKRSVAAAEAATKAGLTCIFNVLE 140
             W      + NP F+ +L++    KD   L LCR   RS  AA+ AT+ G    F++LE
Sbjct: 68  VEWNVYPGGTPNPEFLPQLKNA-ASKDTVLLFLCRGAVRSRHAAKLATENGFAQSFDILE 126

Query: 141 GFEGELDASQQRGKADGWRFHGLPWV 166
           GFEGE DA   R   +GW   GLPW+
Sbjct: 127 GFEGEKDADGHRKNVNGWCKAGLPWI 152


>gi|152982263|ref|YP_001352144.1| hypothetical protein mma_0454
           [Janthinobacterium sp. Marseille]
          Length = 194

 Score = 65.9 bits (159), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 73/169 (43%), Gaps = 41/169 (24%)

Query: 24  PELAQIRAQAMADGLPYAGGIGPQQAWELV--AAGKVVLVDVRTAEERKFVG-------- 73
           P++ Q +A    D          ++A+ L    A K   VDVRT  E  +VG        
Sbjct: 26  PDIKQTKAALYLDA---------KEAYALKQKMADKAYFVDVRTRAEISYVGMSTIVDAS 76

Query: 74  --HVPHSLHVAWATGTSLSRNPRFVRELESKLG------------GKDVPALLLCRSGKR 119
             +V H     W       +N RF  ++ S  G            GK    +L+CRSG R
Sbjct: 77  IPYVEHPDDAPWD-----DKNGRFKLDVNSDFGPELARRMTAAGLGKSDTVILICRSGDR 131

Query: 120 SVAAAEAATKAGLTCIFNVLEGFEGEL-DASQQRGK--ADGWRFHGLPW 165
           S  AA   T  G T ++ V++GFEG+L     Q G+   +GW+  GLPW
Sbjct: 132 SSRAANLLTDLGYTKVYTVVDGFEGDLAKTGPQAGQRVVNGWKNAGLPW 180


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 398,429
Number of extensions: 14528
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 3
Length of query: 168
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 91
Effective length of database: 936,352
Effective search space: 85208032
Effective search space used: 85208032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)