BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2302.p (880 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 386 e-108 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 370 e-103 gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 364 e-101 gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 330 2e-91 gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [... 315 1e-86 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 386 bits (992), Expect = e-108, Method: Compositional matrix adjust. Identities = 234/590 (39%), Positives = 330/590 (55%), Gaps = 16/590 (2%) Query: 299 VASLMAIYLRREVARRTAR----LQQSEASLRIAAAAFH-SSEAIWVMDA---DRKVLEA 350 VA L+++ R V R R Q +EA+LR+ A S+ A+ + A + + Sbjct: 317 VALLVSLAQRVTVEIRAHRDRHGRQAAEAALRLRERAIECSANAVIISSAQVPEFAIEYV 376 Query: 351 NDAFTELTGYRQDELDEHGMPLCRRDELHDDFRAELWTRVQYEGKWQGELLVLHKNGQTF 410 N AF +TGY E R++ E+ + + + + L KNG F Sbjct: 377 NPAFERITGYTAAEAIGRSSSFLLRNDHEQAGLYEIRAALAEKREGKAVLRNYRKNGSLF 436 Query: 411 WAMLTLTAVADPHGKVSHYVGTQVDISSQKRLQEETRQLAFYDPLTGLPNRRLLLEKIEA 470 W L + V D GK +H+V DI+ K+ + +LA +D LTGLPNR LL +++E Sbjct: 437 WNDLYIAPVKDDEGKTTHFVAAMSDITPMKQYETTLHRLASHDVLTGLPNRALLQDRLEN 496 Query: 471 AGASESTRNEVAGALFFVDIDNFKDLNDALGHSLGDQLLSQIAARLLKLTGSSGLVARLG 530 A A S RN A + VD+D FK +ND +GH GD LL I+ RL S VARLG Sbjct: 497 AIAY-SARNGHAVWVVLVDLDRFKFVNDTMGHQAGDVLLKIISDRLQASVRESDTVARLG 555 Query: 531 GDEFVVLLPSALAVQDQKQEQDVASQFAQRIIDVMQERFDLSGVSHFATCSVGVALMRAH 590 GDEFV++LP +S QRI++ + + + G F +CS+G+A+ Sbjct: 556 GDEFVLVLPEC-----GDGPSGYSSDVIQRIMEAVVKPLTIQGSEFFLSCSMGIAVYPND 610 Query: 591 GANVEDLLRQGDLAMYAAKQKGRNTFCLFDQEMEYALHFRTGLESDLRRAIDSGEFELHY 650 GA+ LL D+AMY +K+ GRN F + M R +E +LR AI+ E LHY Sbjct: 611 GADPTTLLAHADVAMYRSKELGRNNFQFYTPAMNDQALERLRIEGELRHAIELNELVLHY 670 Query: 651 QPQRD-QEGTLIGVEALARWNSPFRGSVSPAIFIPVAEASGLILPLGQWVFQQACRQSVR 709 QPQ D G ++G+EAL RWN P G V P FI +AE +GLI+P+G WV Q ACRQ+ Sbjct: 671 QPQVDLHTGAIVGLEALVRWNHPILGMVQPGSFISLAEETGLIIPIGAWVLQTACRQAKA 730 Query: 710 WNRQGHKTPVVIAVNVSAVQLHQPDFVQHILATLQATGADPSHLKLELTESAMVEDVQAT 769 W G T + IAVN+SA Q Q ++ I TLQ TG + L++ELTES+++ D++ Sbjct: 731 WQDMGF-TQLRIAVNLSARQFTQASLLESIKDTLQETGLEARFLEIELTESSVMADIERN 789 Query: 770 IEKMLELKRHGLALSLDDFGTGYSSLSLLKRLPIDQIKIDQSFVRELLVAPSDVAIAKTI 829 I + +LK G+ LS+DDFGTG+SSL+ LKR PID +KID+SFVR++ + D +I +I Sbjct: 790 ILTLRDLKSLGVQLSVDDFGTGHSSLAYLKRFPIDTLKIDRSFVRDIAINQDDASIVSSI 849 Query: 830 IALANALGLEVLAEGVETREQQQFLALLGCTRYQGYLFGRPLPAEQFDAV 879 I+LA+ L L V+AEGVET Q L GC QGY F +PLP++Q + + Sbjct: 850 ISLAHNLKLNVIAEGVETASQMDILRAQGCNEIQGYYFCKPLPSDQIETL 899 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust. Identities = 225/571 (39%), Positives = 321/571 (56%), Gaps = 15/571 (2%) Query: 312 ARRTAR--LQQSEASLRIAAAAFHSSEAIWVMDADRKVLEANDAFTELTGYRQDELDEHG 369 AR+ A LQ E ++ +A A + A+ D + N AFT +TGY +E Sbjct: 382 ARKHAEHELQLRERAIEASANAIIIARAVA---PDYPLEYVNPAFTRITGYSPEEALGRN 438 Query: 370 MPLCRRDELHDDFRAELWTRVQYEGKWQGELLVLHKNGQTFWAMLTLTAVADPHGKVSHY 429 + + EL + + + L K+G FW+ L + V D G+VSH+ Sbjct: 439 IGFLWGKDWEQPGIEELRSIALEKREGHAVLRNYRKDGALFWSDLYIAPVKDDTGEVSHF 498 Query: 430 VGTQVDISSQKRLQEETRQLAFYDPLTGLPNRRLLLEKIEAAGASESTRNEVAGALFFVD 489 V DI++ KR + E D LTGL NR LL +++ A S + R + FVD Sbjct: 499 VVALYDITATKRYESELEFQTNRDALTGLANRSLLRDRLSQA-ISYAHRYNHPIWIAFVD 557 Query: 490 IDNFKDLNDALGHSLGDQLLSQIAARLLKLTGSSGLVARLGGDEFVVLLPSALAVQDQKQ 549 +D FK +ND LGH GD LL IA RL + V+R+GGDEFV++LP ++ Sbjct: 558 LDRFKFVNDTLGHQAGDLLLKAIAERLQHAVRDTDTVSRMGGDEFVLILP-------ERV 610 Query: 550 EQDVASQFAQRIIDVMQERFDLSGVSHFATCSVGVALMRAHGANVEDLLRQGDLAMYAAK 609 + +++ QRI+D + + + G F + S+GVA+ G E+L++ D+AMY AK Sbjct: 611 DAGLSTGIVQRIMDGIAQPLTIEGHEFFISSSIGVAVYPNDGVTPEELIKHADIAMYRAK 670 Query: 610 QKGRNTFCLFDQEMEYALHFRTGLESDLRRAIDSGEFELHYQPQRD-QEGTLIGVEALAR 668 + GRN F + M R LE DLR A++ GEF LHYQPQ D + G ++GVEAL R Sbjct: 671 ETGRNNFQFYTSSMNERALERLRLEGDLRNAMERGEFILHYQPQLDLRTGKIVGVEALIR 730 Query: 669 WNSPFRGSVSPAIFIPVAEASGLILPLGQWVFQQACRQSVRWNRQGHKTPVVIAVNVSAV 728 W P G + P FI +AE +GLI+P+G WV ++ACRQ+ W G + + ++VN+SA Sbjct: 731 WQHPELGMIPPMRFIGLAEETGLIVPIGAWVIREACRQNKVWQEHGLGS-LRMSVNLSAR 789 Query: 729 QLHQPDFVQHILATLQATGADPSHLKLELTESAMVEDVQATIEKMLELKRHGLALSLDDF 788 Q Q D ++ I L+ T P L++ELTES ++ DV I + ELK G+ LS+DDF Sbjct: 790 QFAQQDLLESIALALEETQLPPQCLEIELTESLVMADVDHAIGILRELKALGVQLSIDDF 849 Query: 789 GTGYSSLSLLKRLPIDQIKIDQSFVRELLVAPSDVAIAKTIIALANALGLEVLAEGVETR 848 GTGYSSLS LKR PID +KID+SFV ++ P D AI +II+LA++L L V+AEGVET Sbjct: 850 GTGYSSLSYLKRFPIDVLKIDRSFVNDITTDPDDAAIVASIISLAHSLRLTVIAEGVETE 909 Query: 849 EQQQFLALLGCTRYQGYLFGRPLPAEQFDAV 879 EQ +L C + QGY F RP+ A+ + + Sbjct: 910 EQLAYLQQHDCDQIQGYFFSRPITADAMEVM 940 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust. Identities = 205/476 (43%), Positives = 284/476 (59%), Gaps = 10/476 (2%) Query: 402 VLHKNGQTFWAMLTLTAVADPHGKVSHYVGTQVDISSQKRLQEETRQLAFYDPLTGLPNR 461 V +NG+ W +V + G + + GT I+ +K + E + A +D LTGLPNR Sbjct: 227 VHRRNGEVIWISENARSVYNSDGTLLFFEGTVEAITERKLHEAEIQFQATHDALTGLPNR 286 Query: 462 RLLLEKIEAAGASESTRNEVAGALFFVDIDNFKDLNDALGHSLGDQLLSQIAARLLKLTG 521 LL ++++ A S R A+ F+D+D FK +ND+LGH +GD+LL A RL Sbjct: 287 TLLYDRMQQA-VLHSERYGKLTAIAFLDLDQFKFINDSLGHQVGDELLKITAQRLTSCLR 345 Query: 522 SSGLVARLGGDEFVVLLPSALAVQDQKQEQDVASQFAQRIIDVMQERFDLSGVSHFATCS 581 S VAR GGDEFV+LL DQ E+ + + QR++ + + + + + TCS Sbjct: 346 ESDTVARQGGDEFVLLLT------DQPNEEAI-THTMQRVLHEVSQPWKANDLEFQITCS 398 Query: 582 VGVALMRAHGANVEDLLRQGDLAMYAAKQKGRNTFCLFDQEMEYALHFRTGLESDLRRAI 641 +G+ L G + E LL+ D AMY AK+ GRN F F EM ++ R L + LR+AI Sbjct: 399 IGLTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFSAEMNSSVTDRLELLNRLRQAI 458 Query: 642 DSGEFELHYQPQRD-QEGTLIGVEALARWNSPFRGSVSPAIFIPVAEASGLILPLGQWVF 700 + +F LHYQP+ +IG EAL RWNS G VSPA FIP+AE +GLI+PLG+WV Sbjct: 459 TNEDFVLHYQPKVSLASHQIIGAEALVRWNSAHSGMVSPASFIPLAEETGLIIPLGEWVL 518 Query: 701 QQACRQSVRWNRQGHKTPVVIAVNVSAVQLHQPDFVQHILATLQATGADPSHLKLELTES 760 + ACRQ+ W G+ P+ I+VN+S QL + D V+ + L TG + HL+LE+TES Sbjct: 519 RTACRQNRAWQDAGYP-PIPISVNLSPRQLARGDIVEVVERILTETGLEAQHLELEITES 577 Query: 761 AMVEDVQATIEKMLELKRHGLALSLDDFGTGYSSLSLLKRLPIDQIKIDQSFVRELLVAP 820 M DV+ + + +L+ G+ +SLDDFGTGYSSLS LKR P+D +KIDQSFVR++ Sbjct: 578 VMTTDVEKSFALLTQLRSLGVKISLDDFGTGYSSLSYLKRFPVDTLKIDQSFVRDIATDQ 637 Query: 821 SDVAIAKTIIALANALGLEVLAEGVETREQQQFLALLGCTRYQGYLFGRPLPAEQF 876 AI K II+L L L VLAEG+ET +Q QFL GC QGYL +P+P + F Sbjct: 638 DSAAIVKAIISLGRNLNLTVLAEGIETEDQFQFLLANGCDEGQGYLMSKPVPNKNF 693 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 330 bits (847), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 177/437 (40%), Positives = 263/437 (60%), Gaps = 12/437 (2%) Query: 443 QEETRQLAFYDPLTGLPNRRLLLEKIEAAGASESTRNEVAGALFFVDIDNFKDLNDALGH 502 QE T+Q A D LT LPNR LL ++++ ++ R + AL F+D+D FK +ND+LGH Sbjct: 257 QELTKQ-ALQDNLTKLPNRTLLEDRLDQM-VHKAVREQSRFALMFIDLDGFKAINDSLGH 314 Query: 503 SLGDQLLSQIAARLLKLTGSSGLVARLGGDEFVVLLPSALAVQDQKQEQDVASQFAQRII 562 +GD LL +A R+ + ARLGGDEFV+L+ + E + A+ A ++ Sbjct: 315 HIGDLLLIDVAKRIRDNIRAQDTAARLGGDEFVMLI--------EVNEPEDAASVADKLC 366 Query: 563 DVMQERFDLSGVSHFATCSVGVALMRAHGANVEDLLRQGDLAMYAAKQKGRNTFCLFDQE 622 + + FD++ + + S+G+A+ G+ DLL D AMY K GRN + F+ Sbjct: 367 TTLNQPFDIAQYNLGISASIGIAVYPEDGSTRHDLLIHADAAMYHTKSTGRNGYHFFEAS 426 Query: 623 MEYALHFRTGLESDLRRAIDSGEFELHYQPQ-RDQEGTLIGVEALARWNSPFRGSVSPAI 681 M H + + DLR A++ EF LHYQP+ +G ++G EAL RW P RG V+PA Sbjct: 427 MNINAHNQLQVIQDLRTALERKEFRLHYQPKFNTTDGVVVGAEALLRWQHPIRGIVAPAD 486 Query: 682 FIPVAEASGLILPLGQWVFQQACRQSVRWNRQGHKTPVVIAVNVSAVQLHQPDFVQHILA 741 FI +AE +GLI+P+G+WV +ACRQ +W +G++ IAVN+S+VQ + V+ + Sbjct: 487 FISLAEKTGLIVPIGEWVLDEACRQMRKWYDEGYQQ-WKIAVNLSSVQFSNDNLVEMVKE 545 Query: 742 TLQATGADPSHLKLELTESAMVEDVQATIEKMLELKRHGLALSLDDFGTGYSSLSLLKRL 801 TL + L LE+TES + +V+A++ + +L G+ +S+DDFGTGYSSL LKRL Sbjct: 546 TLARNNLPATCLMLEVTESTAMHNVEASLTILEQLVSLGVEISIDDFGTGYSSLLYLKRL 605 Query: 802 PIDQIKIDQSFVRELLVAPSDVAIAKTIIALANALGLEVLAEGVETREQQQFLALLGCTR 861 P ++KID+ F+R+L D +I I+AL +L L ++AEGVET +QQ++L LGC Sbjct: 606 PATELKIDRGFIRDLAHGSDDASIVSAIVALGRSLNLRIVAEGVETEKQQEYLTTLGCDT 665 Query: 862 YQGYLFGRPLPAEQFDA 878 QGY G P+ +EQF A Sbjct: 666 LQGYFMGHPMASEQFMA 682 >gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [Janthinobacterium sp. Marseille] Length = 876 Score = 315 bits (806), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 205/597 (34%), Positives = 321/597 (53%), Gaps = 30/597 (5%) Query: 298 VVASLMAIYLRREVARRTARLQQSEASLRIAAAAFHSSEAIWVMDADRKVLEANDAFTEL 357 +V S+ I LR+E ++ L + A LR A + I+ D + + +N +F + Sbjct: 283 LVFSIEDITLRKEAEQK---LLEETALLR--AVLDLNPSMIYAKDNEGRFTISNQSFQKR 337 Query: 358 TGY-RQDEL-DEHGMPLCRR-----DELHDDFRAELWTRVQYEGKWQG------ELLVLH 404 G+ +DEL + + LC++ DEL + A+ R + G E+ Sbjct: 338 FGFDSEDELRGKTALDLCQKIAGSKDELSPEVIADEIQRQDLQVMQSGQPLQDLEVRGFW 397 Query: 405 KNGQTFWAMLTLTAVADPHGKVSHYVGTQVDISSQKRLQEETRQLAFYDPLTGLPNRRLL 464 + W + + D GK +G DI+ +K+ + + A +D LT LPNRR L Sbjct: 398 RQDMDRWFHTSKYPLPDVKGKTIGVLGVTRDITKRKQTELQIEYQAMHDMLTDLPNRRFL 457 Query: 465 LEKIEAAGASESTRNEVAGALFFVDIDNFKDLNDALGHSLGDQLLSQIAARLLKLTGSSG 524 + + A + R + + + F D+D FK +ND GH GDQ L +I+ R++ ++ Sbjct: 458 VNTLNTAMETSRLR-QSSLTMLFCDLDFFKSVNDTHGHDFGDQCLIEISKRIVTALPTAD 516 Query: 525 LVARLGGDEFVVLLPSALAVQDQKQEQDVASQFAQRIIDVMQERFDLSGVSHFATCSVGV 584 VAR GG+EFV+L S+LA K A I+ + ER V S+G+ Sbjct: 517 FVARFGGNEFVILTNSSLAEATIK---------ANTIMAAVSERLIFDNVVVKIQTSIGI 567 Query: 585 ALMRAHGANVEDLLRQGDLAMYAAKQKGRNTFCLFDQEMEYALHFRTGLESDLRRAIDSG 644 A + A + DL+R D AMY AK++GRN ++D ++ ++ LR A++ Sbjct: 568 AQLNAGHQSPADLIRDADAAMYQAKERGRNRTEIYDAALQSKTTKHARMDVALRFALERN 627 Query: 645 EFELHYQPQ-RDQEGTLIGVEALARWNSPFRGSVSPAIFIPVAEASGLILPLGQWVFQQA 703 E + YQP+ +G++ G E L RWNSP G +SP FIP+AE SG+++P+G W +QA Sbjct: 628 ELSVAYQPKVLLADGSVQGFELLLRWNSPEYGLISPNEFIPIAETSGMVVPIGMWAMEQA 687 Query: 704 CRQSVRWNRQGHKT-PVVIAVNVSAVQLHQPDFVQHILATLQATGADPSHLKLELTESAM 762 C+Q W +Q + + +A+NVS QL Q F + L ++G P ++LELTE++ Sbjct: 688 CKQLAAWQQQYPEMGSLTMAINVSMRQLLQTSFFSQVRDILNSSGVIPQMVELELTETSA 747 Query: 763 VEDVQATIEKMLELKRHGLALSLDDFGTGYSSLSLLKRLPIDQIKIDQSFVRELLVAPSD 822 + + T+E + LK+ G+ L+LDDFGTGYSSL+ L++LPID +KID++FVR + SD Sbjct: 748 MANPLQTMENLSMLKKLGVRLALDDFGTGYSSLAYLQKLPIDILKIDKAFVRGIGSNQSD 807 Query: 823 VAIAKTIIALANALGLEVLAEGVETREQQQFLALLGCTRYQGYLFGRPLPAEQFDAV 879 I + ++ALA L L+ AEGVET EQ Q L +GC QG+LF PL A++ +A+ Sbjct: 808 TEIIRLMMALAQTLNLQTTAEGVETFEQIQELKKMGCNLGQGFLFSAPLTAQEAEAL 864 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,973,434 Number of extensions: 80080 Number of successful extensions: 339 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 264 Number of HSP's successfully gapped: 34 Length of query: 880 Length of database: 1,221,021 Length adjustment: 92 Effective length of query: 788 Effective length of database: 880,897 Effective search space: 694146836 Effective search space used: 694146836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)