BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2301.p (393 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981725|ref|YP_001351956.1| hypothetical protein mma_0266 [... 205 4e-54 gi|152981572|ref|YP_001351941.1| acyl-CoA dehydrogenase family p... 141 8e-35 gi|152981648|ref|YP_001354310.1| FMNH2-dependent monooxygenase [... 92 8e-20 >gi|152981725|ref|YP_001351956.1| hypothetical protein mma_0266 [Janthinobacterium sp. Marseille] Length = 425 Score = 205 bits (522), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/383 (35%), Positives = 206/383 (53%), Gaps = 21/383 (5%) Query: 8 LLQRIADGAAQRDAQREQPFDLIQEIKATGFGAGRLDADHGGGGASLVDTLDTAIQLGAA 67 + RIA+ A +R+ +RE P++ ++ ++ GFG R+ +GG GA++ ++L A Sbjct: 31 IFARIAEDAVRREQERELPYEAVRWLREAGFGRVRIPLKYGGFGATISQFFRLLVELAEA 90 Query: 68 DPNIAHIWRNHHVALERLLNTPLQHPGVQRLRE----RVRAGDLVGASHTELGQAQIGGN 123 D N++H+ R H LE +N H + +RE ++ G L+G + EL A G + Sbjct: 91 DSNVSHLLRGHFAFLESRIN----HTD-ESVREFWFPKIVEGSLIGYAMAEL-TAVTGTS 144 Query: 124 APLTTRLVRQGDHYVLNGQKFYSTGSLFADWLHVTVSVEDG-RRAVVLLPRQREGVQTLD 182 A +T +Q + LNG+K+YSTG+++ADW + SV DG R V LP GV +D Sbjct: 145 ATIT----QQDGKWFLNGKKYYSTGTIYADW--IVASVVDGEERVSVSLPATAPGVTRID 198 Query: 183 DWYGMGQRLTGSGTTVFENVLVSADEV--VLPDQVPIQQAVFGSTIAQLFLTSVIAGVVA 240 DW G GQR+TGSGTTVFE V + + + L + Q+ + QL L + IAGV Sbjct: 199 DWDGFGQRMTGSGTTVFEQVEILPEHINRRLTGKDSYAQS-YQKAFLQLILLASIAGVGR 257 Query: 241 AVARDGAALLGKRKRNYYYAPTPSAAQDPILLTAQGEREADAFATRAVVLAAAATADQAY 300 AV RDG A + ++ R + S DP++ G + +FA +V A T D+ + Sbjct: 258 AVKRDGIAFVQRKTRAFGVLGESSPRHDPLVQRVVGRLASLSFAADTIVEGIARTLDEVH 317 Query: 301 AALKTSAADADARLQDAAAAAAKAKIIVDRIAHHAATALFDIAGASATLTQLNLDRHWRN 360 A AD +A D A +A+ IV + A+T LF++ GASAT LDRHWRN Sbjct: 318 QARLADTAD-EALYVDTEIKAFQAQQIVIDLVLQASTLLFEVGGASATSESRRLDRHWRN 376 Query: 361 IRTISTHNPTSHKAYALGNLSVN 383 RT ++HNP + A+G+ +N Sbjct: 377 ARTAASHNPAIFRERAIGDYYLN 399 >gi|152981572|ref|YP_001351941.1| acyl-CoA dehydrogenase family protein [Janthinobacterium sp. Marseille] Length = 437 Score = 141 bits (355), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 106/380 (27%), Positives = 173/380 (45%), Gaps = 16/380 (4%) Query: 8 LLQRIADGAAQRDAQREQPFDLIQEIKATGFGAGRLDADHGGGGASLVDTLDTAIQLGAA 67 L A A+ RD +R PF +++I +G + +HGG G S V A Sbjct: 31 LADEFAQEASVRDRERRLPFAELKKITQSGLWGITVPKEHGGAGVSYVTLAQIFAIFSRA 90 Query: 68 DPNIAHIWRNHHVALERLLNTPLQHPGVQRLRERVRAGDLVGASHTELGQAQIGGNAPLT 127 D +I I +NH+ +E L+ + ER+ AGD G + EL + Sbjct: 91 DGSIGQIPQNHYFVIE-LIREHGTEEQKKFFFERILAGDHFGNALVELNAKKPEDR---K 146 Query: 128 TRLVRQGD-HYVLNGQKFYSTGSLFADWLHVTVSVEDGRRA-VVLLPRQREGVQTLDDWY 185 L GD HY +K+Y+TGSL+ADW+ ++ ED + R EG+ +DDW Sbjct: 147 VSLFADGDEHYRATVRKYYATGSLYADWIPTALNSEDKEEHHLAFFSRHAEGLTIIDDWA 206 Query: 186 GMGQRLTGSGTTVFENVLVSADEVVLPDQVPIQQAVFGSTIAQLFLTSVIAGVVAAVARD 245 G+GQR T SG+ + +N ++ + VV + + G T Q+ ++ G+ A Sbjct: 207 GLGQRTTASGSVILDNARIAKNLVVSHREKKEHVSPVGPT-GQIMHAAIDTGIARAAFEA 265 Query: 246 GAALL-GKRKRNYYYAPTPSAAQDPILLTAQGEREADAFATRAVVLAAAATADQAYA-AL 303 A + G+ + AP S +D + + G+ A++ A D AY L Sbjct: 266 TIAFIRGRNPKKPDAAPDASWEEDQLTIREIGDLSVALHGAEALLERAGRIIDHAYVTGL 325 Query: 304 KTSAADADARLQDAAAAAAKAKIIVDRIAHHAATALFDIAGASATLTQLNLDRHWRNIRT 363 +T A + + AA+ A +++ LF+ +G AT ++ NLDR+WR+ RT Sbjct: 326 QTDWTKASIAVSEVRAASTHAALLI-------TNKLFEFSGTQATASKHNLDRYWRDART 378 Query: 364 ISTHNPTSHKAYALGNLSVN 383 + H+P + Y +GN +N Sbjct: 379 HTLHDPVRWRLYDVGNYYLN 398 >gi|152981648|ref|YP_001354310.1| FMNH2-dependent monooxygenase [Janthinobacterium sp. Marseille] Length = 417 Score = 91.7 bits (226), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 117/258 (45%), Gaps = 7/258 (2%) Query: 136 HYVLNGQKFYSTGSLFADWLHVTV--SVEDGRRAVVLLPRQREGVQTLDDWYGMGQRLTG 193 HY LNG K + +G+ +D L++T S + R + +P R GV+ LDDW +GQR T Sbjct: 160 HYELNGIKSFCSGATGSDMLNITAPRSADPADRVFLSIPTDRSGVKVLDDWDNLGQRQTD 219 Query: 194 SGTTVFENVLVSADEVVLPDQVP-IQQAVFGSTIAQLFLTSVIAGVVAAVARDGAALLGK 252 SG+ F+ V V A EV+ P +A + ++QL L + G + + Sbjct: 220 SGSVTFDKVRVEAHEVLGPPGTSGTPRATLRTLVSQLILIEIYIGNAQGALLNAWQYTHE 279 Query: 253 RKRNYYYAPTPSAAQDPILLTAQGEREADAFATRAVVLAAAATADQAYAALKTSAADADA 312 + R ++ + A DP G+ A A+ AAA +A+ + A A Sbjct: 280 QGRPWFTSGVARAIDDPFTQQHYGDLRIALRAAIALAEDAAARLQKAW---ERGDALTAA 336 Query: 313 RLQDAAAAAAKAKIIVDRIAHHAATALFDIAGASATLTQLNLDRHWRNIRTISTHNPTSH 372 + A A + KI R A +F++ GA AT + DR WRN+R + H+ + Sbjct: 337 ERGELAVAIYETKIAAARAALDITAKIFEVMGARATAAKYGFDRFWRNVRVHTLHDSLDY 396 Query: 373 KAYALGNLSVN-QVSLPT 389 K +G + +V P+ Sbjct: 397 KLKDVGQWVLTGEVPTPS 414 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.132 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 798,121 Number of extensions: 32257 Number of successful extensions: 106 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 3 Length of query: 393 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 308 Effective length of database: 906,776 Effective search space: 279287008 Effective search space used: 279287008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)