BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2299.p
         (121 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983088|ref|YP_001353415.1| copper resistance signal peptid...    66   6e-13
gi|152981886|ref|YP_001352487.1| copper resistance signal peptid...    62   8e-12

>gi|152983088|ref|YP_001353415.1| copper resistance signal peptide
           protein C [Janthinobacterium sp. Marseille]
          Length = 125

 Score = 66.2 bits (160), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 6   RLLGLAALAGLVLTQSAWAHAHLKTAEPADKAVVASPADLTLGFSEGLNLKFSGLKLL-- 63
           R +G+AAL  LV T SA+AH  L  + P D +   +PA + L FSE L  +FSG  L+  
Sbjct: 8   RQIGVAALVTLVAT-SAFAHPSLVESTPKDNSEGPAPAKIELRFSENLTKQFSGANLIMA 66

Query: 64  -GPDQQEVKLGQAMLMDEGKSLMVSVPAR-LPAGAYTVQWHALSVDGHKTEGSYSFSV 119
             P    +K+   +   +   +MV  P + L  G Y V+W A+S D H   G  +F+V
Sbjct: 67  EMPGMGAMKMAAKIGGTDDPKVMVLTPNQPLTPGKYNVEWRAVSTDTHPITGKITFTV 124


>gi|152981886|ref|YP_001352487.1| copper resistance signal peptide
           protein C [Janthinobacterium sp. Marseille]
          Length = 128

 Score = 62.4 bits (150), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 7/102 (6%)

Query: 25  HAHLKTAEPADKAVVASPADLTLGFSEGLNLKFSGLKLLGP------DQQEVKLGQAMLM 78
           H  L ++ P DK+  A+P  + L F+E LN KFSG  L+        +   +K+G ++  
Sbjct: 26  HPELVSSTPGDKSEGAAPTTIELKFTETLNKKFSGATLIMTEMPGMANHGSMKMGASVSG 85

Query: 79  DEGKSLMVSVPAR-LPAGAYTVQWHALSVDGHKTEGSYSFSV 119
                 MV  PA+ L AG+Y V+W A+S D H  +GS SF V
Sbjct: 86  GSDDKTMVITPAKPLVAGSYRVEWRAVSSDTHPVKGSISFEV 127


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 257,394
Number of extensions: 9414
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 2
Length of query: 121
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 49
Effective length of database: 954,837
Effective search space: 46787013
Effective search space used: 46787013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)