BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2298.p
         (290 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981806|ref|YP_001352488.1| copper resistance protein D [Ja...    74   1e-14
gi|152983089|ref|YP_001353416.1| copper resistance protein D [Ja...    64   9e-12

>gi|152981806|ref|YP_001352488.1| copper resistance protein D
           [Janthinobacterium sp. Marseille]
          Length = 310

 Score = 73.6 bits (179), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 15/171 (8%)

Query: 132 TGHAVMDDGCKRWAHQASDLLHVGSVGAWMGAL--PVVLLVLSRQCLSVYPALAKQILRR 189
           +GHA M+DG K   H  SD+ H+ + GAW+GAL   V+L V+  +     P +  +    
Sbjct: 138 SGHAAMNDGVKGMIHLVSDIAHLLAAGAWVGALFSFVMLAVMKPKFYPDAPEVLSKTSNG 197

Query: 190 FSNVGHAVVALVLLSGLCNTWLILG----GLPLDWRFPYQVLLALKILVAVMMVLIAIFN 245
           F  +G  +VA ++ +G+ N  LI+G    GL       Y +LL++K+ + + M+ +A  N
Sbjct: 198 FGRLGTVIVATLMTTGIANYLLIIGPSIKGLITT---QYGMLLSVKLALFLGMLALATAN 254

Query: 246 RYVLVPAMR------HDRSALDRLRRLSLLEIGLGWLALLLLAWLGMLQPN 290
           R+ L P +       +   A+  LRR  L E  L  L +  +AWLG+L P 
Sbjct: 255 RFFLGPRVELALQAGNQLEAVSLLRRSMLTETALVVLVIACVAWLGVLAPT 305


>gi|152983089|ref|YP_001353416.1| copper resistance protein D
           [Janthinobacterium sp. Marseille]
          Length = 306

 Score = 64.3 bits (155), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 13/178 (7%)

Query: 123 GILLVSLALTGHAVMDDGCKRWAHQASDLLHVGSVGAWMGALPVVLLVLSRQCLSVYPAL 182
           GI L +LA  GH VM++  K + H  +D++H+ + GAW+GAL   +L+L R       A 
Sbjct: 130 GIALATLAWGGHGVMNEDVKGFVHLGADIVHLIAAGAWIGALASFVLLL-RWVPKGGRAE 188

Query: 183 AKQ---ILRRFSNVGHAVVALVLLSGLCNTWLILGGLPLDWRF--PYQVLLALKILVAVM 237
            +Q   +L  F+ +G  +V+ +L++G  N +L++ GL     F   Y VLL +K+   + 
Sbjct: 189 VEQLGRMLNGFAIMGSVIVSTLLVTGTIN-YLMISGLNFSSIFTTTYGVLLTIKLAFFLA 247

Query: 238 MVLIAIFNRYVLVPAMR----HDRS--ALDRLRRLSLLEIGLGWLALLLLAWLGMLQP 289
           M+ +A  NRY L P +     +D    A+  LR   +LE G   L L L+A LGML P
Sbjct: 248 MLALAAANRYRLTPKLEASIANDNHGPAIAALRSSLVLESGCALLILALIACLGMLNP 305


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.330    0.142    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 531,943
Number of extensions: 19873
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 2
Length of query: 290
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 208
Effective length of database: 917,867
Effective search space: 190916336
Effective search space used: 190916336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)