BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2293.p (325 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981133|ref|YP_001355363.1| sigma-54 dependent response reg... 226 2e-60 gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptio... 216 2e-57 gi|152979868|ref|YP_001354671.1| two-components system response ... 211 6e-56 gi|152982294|ref|YP_001354298.1| transcriptional regulator [Jant... 208 3e-55 gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(... 199 2e-52 >gi|152981133|ref|YP_001355363.1| sigma-54 dependent response regulator [Janthinobacterium sp. Marseille] Length = 481 Score = 226 bits (576), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 181/306 (59%), Gaps = 10/306 (3%) Query: 9 MIGSSPQMERVDAQLRKMASVEATVLIEGETGTGKELAARAIHYLGPRRDKPFIPINCGA 68 ++G+S +E + ++++A+V +TVLI GE+GTGKE+AARA+H L R F+PINCGA Sbjct: 186 LVGASAALEPIREAIKRLATVPSTVLITGESGTGKEIAARAMHKLSNRSHNHFVPINCGA 245 Query: 69 LPEQLIESELFGHERGAFTDAKSAAPGLVADADGGTLFLDEVDALNYKAQTAILRFLQDH 128 + +IESELFGH +GAF+ A S+ GL A GGTLFLDEV L Q +LR L++ Sbjct: 246 VAPDIIESELFGHIKGAFSGAASSREGLFFYAQGGTLFLDEVAELPLAMQVKLLRVLEEK 305 Query: 129 TYRRVGSGVTRKANVRIVAATNNRLNALVETGRFRRDLMYRLNVLSINLPPLRERGNDAV 188 R VG+ +VR++AATN + V+ GRFR+DL YRLNV+ +++PPLRER D Sbjct: 306 RIRPVGAEREIPVDVRVIAATNRNVEEAVQEGRFRQDLYYRLNVVQLHMPPLRERTEDIP 365 Query: 189 EMAQAFLSRFAHQYRMPDRRLHASALDFIAQYDWPGNIRELENMMHREFLMSDTTDIYLG 248 +A+ F+ + A Q +P ++ ++ +A Y WPGN+REL N++ R ++ + +D+ Sbjct: 366 ALAEYFVRQLAQQLGVPAKKPDSALFASLAGYSWPGNVRELRNLIERWLILGNISDVTAA 425 Query: 249 TQRPVQGSADEDVVQFKPMKEKMIHDFERRYVRDVLTRVDGNLTRAAKLAGQERSAFGKL 308 GS + + + E++++ +L V GN T A + G R + Sbjct: 426 NN---TGSTTTN-------GDVTLEAVEKQHILKILAEVGGNKTEAGRRLGISRKTLERK 475 Query: 309 ARKHGL 314 + G+ Sbjct: 476 CAEWGV 481 >gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptional activator [Janthinobacterium sp. Marseille] Length = 550 Score = 216 bits (550), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 177/304 (58%), Gaps = 17/304 (5%) Query: 1 MDDFRRLHMIGSSPQMERVDAQLRKMASVEATVLIEGETGTGKELAARAIHYLGPRRDKP 60 MD+ +I SP M+++ A +K+A V ATVLI GE+G GKE+ R IH P Sbjct: 240 MDNPAIAGLITRSPGMQQITALAQKVAKVSATVLISGESGVGKEVLTRLIHKESAHHAGP 299 Query: 61 FIPINCGALPEQLIESELFGHERGAFTDA-KSAAPGLVADADGGTLFLDEVDALNYKAQT 119 F+ INCGA+P L+ESELFG+E GAFT A + G++ AD GTLFLDE+ L Q Sbjct: 300 FVKINCGAIPRDLLESELFGYEAGAFTGAQRQGKVGMIEVADKGTLFLDEIGELPLDLQV 359 Query: 120 AILRFLQDHTYRRVGSGVTRKANVRIVAATNNRLNALVETGRFRRDLMYRLNVLSINLPP 179 +L+ LQD T R+G + +VR+VAATN L A+V+ +FR DL YRLNV+ +++PP Sbjct: 360 KLLQVLQDRTLTRLGGTRPIQVDVRVVAATNRDLQAMVDARQFRSDLFYRLNVVPLHVPP 419 Query: 180 LRERGNDAVEMAQAFLSRFAHQYRMPDRRLHASALDFIAQYDWPGNIRELENMMHR---- 235 LRER D + + Q +L QY + D+RL AL + YDWPGN+REL NM+ R Sbjct: 420 LRERREDILPLIQHYLDELNAQYDL-DKRLSEQALAALLDYDWPGNVRELRNMVERLVVT 478 Query: 236 ---EFLMSDTTDIYLGTQRPVQGSADEDVVQFKPMKEKMIHDFERRYVRDVLTRVDGNLT 292 + SD+ L + + D+ + +K + H FER+ V++ + R GN Sbjct: 479 APESLIRSDSLPTLLRS-----SELESDLARLD-IKARSAH-FERKIVKEAVERY-GNTR 530 Query: 293 RAAK 296 AAK Sbjct: 531 AAAK 534 >gi|152979868|ref|YP_001354671.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 471 Score = 211 bits (536), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 125/320 (39%), Positives = 178/320 (55%), Gaps = 32/320 (10%) Query: 7 LHMIGSSPQMERVDAQLRKMASVEATVLIEGETGTGKELAARAIHYLGPRRDKPFIPINC 66 L ++G S M + AQ+ ++A A V I GE+G+GKELAAR IH R DKPF+ +NC Sbjct: 138 LRLMGQSEAMLALRAQIARLARSMAPVAISGESGSGKELAARDIHAQSARSDKPFVAVNC 197 Query: 67 GALPEQLIESELFGHERGAFTDAKSAAPGLVADADGGTLFLDEVDALNYKAQTAILRFLQ 126 GA+PE L+E+E FG+ +GAFT A G A+GGTL LDEV L Q +LR +Q Sbjct: 198 GAIPEALMEAEFFGYRKGAFTGAVDDRDGFFQAANGGTLLLDEVADLPLAMQVKLLRAIQ 257 Query: 127 DHTYRRVGSGVTRKANVRIVAATNNRLNALVETGRFRRDLMYRLNVLSINLPPLRERGND 186 + R+VG+ +VRI++AT+ L+ V G FR+DL YRLNV+ +NLPPLRER +D Sbjct: 258 ERRVRKVGATTEEPVDVRIISATHQNLHDCVGRGTFRQDLYYRLNVIELNLPPLRERLDD 317 Query: 187 AVEMAQAFLSRF-AHQYRMPDRRLHASALDFIAQYDWPGNIRELENMMHREFLMS----- 240 +A+A L+R A Q RL +AL+ + QY +PGN+RELEN++ R + Sbjct: 318 IALLAKAILTRLDAGQA-----RLTPAALEALLQYSFPGNVRELENILERALAFANDGVI 372 Query: 241 DTTDIYLGTQRPVQGSADEDVVQFKPMKEKMI---------------------HDFERRY 279 + +D+ L + A E V ++ M+ D ER Sbjct: 373 EVSDLVLKAAHTPKAVAAEMVEALAVPEQAMVAPDAKPLAATSDLPGSLPDHLDDVEREI 432 Query: 280 VRDVLTRVDGNLTRAAKLAG 299 +R L++ N T+AA+L G Sbjct: 433 IRRALSKTQFNRTQAAELLG 452 >gi|152982294|ref|YP_001354298.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 371 Score = 208 bits (530), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 114/292 (39%), Positives = 170/292 (58%), Gaps = 2/292 (0%) Query: 9 MIGSSPQMERVDAQLRKMASVEATVLIEGETGTGKELAARAIHYLGPRRDKPFIPINCGA 68 + G+S M+++ + K+A A VLI GE+GTGKEL A+AIH L +DKPF+ +NC A Sbjct: 45 LYGASAPMQQLFQMIGKVAPTTANVLIAGESGTGKELVAQAIHQLSREQDKPFVALNCSA 104 Query: 69 LPEQLIESELFGHERGAFTDAKSAAPGLVADADGGTLFLDEVDALNYKAQTAILRFLQDH 128 + QLIE+ELFGHERG+FT A G ADGGTLFLDEV ++ Q +LR L+ Sbjct: 105 VSPQLIEAELFGHERGSFTGAIRMQKGCFERADGGTLFLDEVTEMSLDMQVKLLRVLETS 164 Query: 129 TYRRVGSGVTRKANVRIVAATNNRLNALVETGRFRRDLMYRLNVLSINLPPLRERGNDAV 188 + R+G+ + VR+VAATN +++G R DL YRL V ++LPPLRERG D Sbjct: 165 RFCRIGAEEETEVKVRVVAATNRDPVEAMKSGILRSDLFYRLAVFPLDLPPLRERGEDIR 224 Query: 189 EMAQAFLSRFAHQYRMPDRRLHASALDFIAQYDWPGNIRELENMMHREFLMSDTTDIYLG 248 +A FL + ++ +R ++ + +Y+WPGN+REL+N++HR ++M+D L Sbjct: 225 LLAGLFLDQL-NEEDGRNRVFSKASWRLLNEYNWPGNVRELKNVVHRAYIMADQELELLP 283 Query: 249 TQRPVQGSADEDVVQFKPMK-EKMIHDFERRYVRDVLTRVDGNLTRAAKLAG 299 P + + + ++ + D E+R + L GN T A++ G Sbjct: 284 AVNPNRSMVSDQIGDCVTVQLGSKLADAEQRLIYATLGHCGGNKTLTAEVLG 335 >gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 199 bits (506), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 102/232 (43%), Positives = 148/232 (63%) Query: 9 MIGSSPQMERVDAQLRKMASVEATVLIEGETGTGKELAARAIHYLGPRRDKPFIPINCGA 68 ++G +P M+ V + +++ TVLI GE+G+GKEL ARA+H PR +PFI +N A Sbjct: 136 ILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKHSPRASQPFIALNTAA 195 Query: 69 LPEQLIESELFGHERGAFTDAKSAAPGLVADADGGTLFLDEVDALNYKAQTAILRFLQDH 128 +P+ L+ESELFGHERGAFT A++ G A+ GTLFLDE+ + + QT +LR L D Sbjct: 196 IPKDLLESELFGHERGAFTGAQATRRGRFEQAENGTLFLDEIGDMPFDLQTRLLRVLSDG 255 Query: 129 TYRRVGSGVTRKANVRIVAATNNRLNALVETGRFRRDLMYRLNVLSINLPPLRERGNDAV 188 + RVG KANVR++AAT+ L V G FR DL +RLNV+ + LP LRER D Sbjct: 256 HFYRVGGHQPLKANVRVIAATHQNLEHRVREGLFREDLYHRLNVIRLRLPSLRERREDIP 315 Query: 189 EMAQAFLSRFAHQYRMPDRRLHASALDFIAQYDWPGNIRELENMMHREFLMS 240 + + FL + A Q + +R+ SA+ F++ + PGN+R+LEN+ + +M+ Sbjct: 316 ILTRHFLQQSAKQLGVEVKRMSDSAMQFLSSLELPGNVRQLENLCNWITVMA 367 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 740,878 Number of extensions: 30500 Number of successful extensions: 106 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 7 Length of query: 325 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 242 Effective length of database: 914,170 Effective search space: 221229140 Effective search space used: 221229140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)