BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2281.p
         (362 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980852|ref|YP_001353914.1| pentapeptide repeat-containing ...    57   2e-09

>gi|152980852|ref|YP_001353914.1| pentapeptide repeat-containing
           protein [Janthinobacterium sp. Marseille]
          Length = 243

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 10/148 (6%)

Query: 121 LCTVSECDFSATDLRDARLERSSFHQCQTDGADLSRVVLERASLQGIDFQGVTMTGLRAQ 180
           L TV     +  +LRDA L  ++        ADL    L  A+L+  D  G  +      
Sbjct: 25  LATVKAALAAGANLRDADLSGANLRGANLRDADLRDADLSGANLRDADLSGANLRDADLS 84

Query: 181 GSVLAKADLRGKALSGIQLQRCMFTDSLLDDTDLQGADLSQSSFMGARLVRTNLQGVLAS 240
           G+ L+ ADL G  LSG  L       + L   +L GADLS ++  GA L   NL G    
Sbjct: 85  GANLSDADLSGANLSGADLSGANLGGANLGGANLSGADLSGANLSGANLRGANLSG---- 140

Query: 241 HGMFAKATLQQANMAQGDFHSAIFHQAT 268
                 A L+   +   D H A++  A+
Sbjct: 141 ------ANLRDYPVKIKDIHKAVYEAAS 162



 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 58/121 (47%)

Query: 107 CDLRGSRWQQSHWHLCTVSECDFSATDLRDARLERSSFHQCQTDGADLSRVVLERASLQG 166
            DL G+  + ++     + + D S  +LRDA L  ++       GA+LS   L  A+L G
Sbjct: 41  ADLSGANLRGANLRDADLRDADLSGANLRDADLSGANLRDADLSGANLSDADLSGANLSG 100

Query: 167 IDFQGVTMTGLRAQGSVLAKADLRGKALSGIQLQRCMFTDSLLDDTDLQGADLSQSSFMG 226
            D  G  + G    G+ L+ ADL G  LSG  L+    + + L D  ++  D+ ++ +  
Sbjct: 101 ADLSGANLGGANLGGANLSGADLSGANLSGANLRGANLSGANLRDYPVKIKDIHKAVYEA 160

Query: 227 A 227
           A
Sbjct: 161 A 161


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 721,923
Number of extensions: 26173
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 278
Effective length of database: 910,473
Effective search space: 253111494
Effective search space used: 253111494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)