BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2280.p
         (911 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980852|ref|YP_001353914.1| pentapeptide repeat-containing ...    76   7e-15

>gi|152980852|ref|YP_001353914.1| pentapeptide repeat-containing
           protein [Janthinobacterium sp. Marseille]
          Length = 243

 Score = 76.3 bits (186), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 65/116 (56%), Gaps = 5/116 (4%)

Query: 590 GLQIRQWHQGGALLAGRDLAGIDLREADLRGADLREVMLEQADLRGACLAGANLEGAVLC 649
           G  +R     GA L G +L   DLR+ADL GA+LR+  L  A+LR A L+GANL  A L 
Sbjct: 35  GANLRDADLSGANLRGANLRDADLRDADLSGANLRDADLSGANLRDADLSGANLSDADLS 94

Query: 650 GAMLDGADFTDARLHHANLCASSAAGTCFAGADLRQARVSHARWQGSTLRAARLND 705
           GA L GAD + A L  ANL      G   +GADL  A +S A  +G+ L  A L D
Sbjct: 95  GANLSGADLSGANLGGANL-----GGANLSGADLSGANLSGANLRGANLSGANLRD 145



 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 59/103 (57%)

Query: 601 ALLAGRDLAGIDLREADLRGADLREVMLEQADLRGACLAGANLEGAVLCGAMLDGADFTD 660
           AL AG +L   DL  A+LRGA+LR+  L  ADL GA L  A+L GA L  A L GA+ +D
Sbjct: 31  ALAAGANLRDADLSGANLRGANLRDADLRDADLSGANLRDADLSGANLRDADLSGANLSD 90

Query: 661 ARLHHANLCASSAAGTCFAGADLRQARVSHARWQGSTLRAARL 703
           A L  ANL  +  +G    GA+L  A +S A   G+ L  A L
Sbjct: 91  ADLSGANLSGADLSGANLGGANLGGANLSGADLSGANLSGANL 133


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 2,121,733
Number of extensions: 90000
Number of successful extensions: 343
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 4
Length of query: 911
Length of database: 1,221,021
Length adjustment: 92
Effective length of query: 819
Effective length of database: 880,897
Effective search space: 721454643
Effective search space used: 721454643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)