BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2272.p (401 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980079|ref|YP_001353290.1| major facilitator transporter [... 118 8e-28 gi|152982828|ref|YP_001354323.1| major facilitator transporter [... 110 2e-25 gi|152982482|ref|YP_001352263.1| major facilitator transporter [... 100 2e-22 gi|152982528|ref|YP_001352447.1| major facilitator transporter [... 91 1e-19 >gi|152980079|ref|YP_001353290.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 412 Score = 118 bits (295), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 117/378 (30%), Positives = 178/378 (47%), Gaps = 6/378 (1%) Query: 18 VLSVAAGSAIANNYAMQPALSLIAADFGVPVAPMTALASAAIIGYLLGLVLLVPLTDKLS 77 + +VA G ++AN Y QP L +AADFG+ + + + +G + L+LLVPL D L+ Sbjct: 30 LFAVACGLSVANVYYAQPLLDALAADFGLATGVIGIVVTMTQLGSAIALLLLVPLGDMLN 89 Query: 78 PRVLIPGQLFALACALLLAAWAASPEVLIGCFVLIGATTTVAAQS-SAVVGKYAHAQHRA 136 R L+ QL++LA AL+L A AA+P L+ + +G T Q A A R Sbjct: 90 RRRLLLAQLWSLALALVLVAAAATPAYLLVGMLFVGMLGTAMTQGLIAYAATIAALTERG 149 Query: 137 LSMATISAGISAGILLSRFVGGVLAQWWGWRGALLAFAAFAAVSALCVLPLLPTQGPDAQ 196 + T AG+ G+L +R + G +A WR L A + AL ++ +LP P++ Sbjct: 150 RVVGTTQAGVLVGLLSARVLAGAIADISSWRMVYLVSAGMMLMLALLLVRVLPQ--PNSH 207 Query: 197 SG---YFSNLRSMPILMKTSRELRLRIYAGMLWFFAFNLIWVGLVVRLAAPPFNLDAAHI 253 S Y L SM LM R L++R ML F A ++ W LV+ L+A P+N I Sbjct: 208 SSGLSYLQLLASMGRLMWRERVLQVRGVIAMLMFAALSIFWSALVLPLSAAPYNYSKTAI 267 Query: 254 GLYSLAGLMGLLMTRVAGRLADRFGHRRVVVSGLTSAFFAAIGLALVLGHPAAIAVALAV 313 G L G++G L GR AD+ +R + L + + LAL+ + V + Sbjct: 268 GALGLIGVLGALAASRTGRWADQGWGQRTSAAALILLVVSWLPLALMQHGWIFLVVGIIA 327 Query: 314 FDAGCFTAQVANQAGVVAIEPSRAGVLNSAYLFFYYVAGTIGAALAGVIVGSAGWEALTL 373 D V NQ+ + ++ + L Y+ FY +GA A GW A+ + Sbjct: 328 LDLAGQAIHVTNQSMIFNVQEGSSSRLVGCYMLFYAAGSGLGAIAATNAFAYGGWSAVCI 387 Query: 374 LAAVATASAAIISLLSPP 391 L AV + A + S P Sbjct: 388 LGAVVSGLALLFWYCSRP 405 >gi|152982828|ref|YP_001354323.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 407 Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 105/365 (28%), Positives = 163/365 (44%), Gaps = 8/365 (2%) Query: 11 LSGRALAVLSVAAGSAIANNYAMQPALSLIAADFGVPVAPMTALASAAIIGYLLGLVLLV 70 L+ AL ++++A+G NY QP L IA V + A + Y GLVLLV Sbjct: 20 LATSALLLMALASGLCAGGNYFNQPLLRSIALSLNVSETTAALTVTMAQVSYAFGLVLLV 79 Query: 71 PLTDKLSPRVLIPGQLFALACALLLAAWAASPEVLIGCFVLIGATTTVAAQSSAVVGKYA 130 PL DKL R L + A ++ +A + +L ++ G + A + + Sbjct: 80 PLGDKLERRGLAVTLMLLAAAGQFISGFAFNITMLSTGIIMAGLFSVAAQIMVPMAATLS 139 Query: 131 HAQHRALSMATISAGISAGILLSRFVGGVLAQWWGWRGALLAFAAFAAVSALCVLPLLPT 190 ++ + +G+ GIL +R V G+L++ GW + AL + LLP Sbjct: 140 DPARSGRAVGLVMSGLLIGILTARSVAGLLSELGGWTTVYRVAGVIMLLVALALWYLLPP 199 Query: 191 QGPDAQSGYFSNLRSMPILMKTSRELRLRIYAGMLWFFAFNLIWVGLVVRLAAPPFNLDA 250 AQ Y LRSM L+ LR R G L F + ++++ + + L+ P L Sbjct: 200 SRNPAQVSYLQVLRSMTALIGRYPRLRSRSLMGALTFASVSVLFSTMALLLSGPNHGLSD 259 Query: 251 AHIGLYSLAGLMGLLMTRVAGRLADR-FGHRRVVVSGLTSAFFAAIGLALV-LGHPAAI- 307 A IGL L G+ G LM VAGR+AD+ GH V+ + F + A LG + I Sbjct: 260 ASIGLVGLVGIAGALMASVAGRMADKGMGH----VTSIGCLFLLLLAWACFWLGSTSLIW 315 Query: 308 -AVALAVFDAGCFTAQVANQAGVVAIEPSRAGVLNSAYLFFYYVAGTIGAALAGVIVGSA 366 V + + D + NQ V+ +EP LN+ Y+ Y++ G+AL + Sbjct: 316 FLVGMLIIDLALQGLHITNQNVVLQLEPQARSRLNAVYMTSYFIGAASGSALGSLAWRLG 375 Query: 367 GWEAL 371 GW A+ Sbjct: 376 GWHAI 380 >gi|152982482|ref|YP_001352263.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 403 Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 118/369 (31%), Positives = 175/369 (47%), Gaps = 9/369 (2%) Query: 18 VLSVAAGSAIANNYAMQPALSLIAADFGVPVAPMTALASAAIIGYLLGLVLLVPLTDKLS 77 +L+ AG ++A+ Y QP L ++ AD + + + +GY LG++LL PL D+ Sbjct: 23 LLATGAGLSVASLYYSQPMLGVLGADIHASDRMIGLVPTLTQLGYALGILLLAPLGDRYD 82 Query: 78 PRVLIPGQLFALACALLLAAWAASPEVLIGCFVLIGATTTVAAQSSAVVGKYAHAQHRAL 137 R +I + LA ALL + A L+ ++IG T T+A A HR Sbjct: 83 RRSIILVKAALLALALLFSGLAPGISWLLLSSLVIGLTATMAQDIVPAAATLAPESHRGK 142 Query: 138 SMATISAGISAGILLSRFVGGVLAQWWGWRGALLAFAAFAAVSALCVLPLLPTQGPDAQS 197 + T+ G+ GILLSR + G A+ +GWR +A + A+ A+ LP P Q Sbjct: 143 IVGTVMTGLLLGILLSRVISGFGAEAFGWRSVYIAASVGVAMIAVATWRGLPRFQPTTQL 202 Query: 198 GYFSNLRSMPILMKTSRELRLRIYAGMLWFFAFNLIWVGLVVRLAAPPFNLDAAHIGLYS 257 Y L SM L + LR A L F+ W L V L PF+L +A G + Sbjct: 203 AYGQLLGSMVQLWRRHGALRQAALAQGLLALGFSAFWSTLAVMLHGAPFHLGSAAAGSFG 262 Query: 258 LAGLMGLLMTRVAGRLADRFGHRRVVV--SGLTSAFFAAIGLALVLGHPAAIAVALAV-- 313 LAG G L +AG+LAD+ G V +GL + FA + LA +L P + +AL V Sbjct: 263 LAGAAGALAAPLAGKLADKRGPELVTRLGAGLAAVSFAVMLLAPML--PVHLQLALLVAA 320 Query: 314 ---FDAGCFTAQVANQAGVVAIEPSRAGVLNSAYLFFYYVAGTIGAALAGVIVGSAGWEA 370 FD G +A+Q V I+P LN+ ++ GAAL +++ GW Sbjct: 321 TVGFDLGVQATLIAHQTIVYGIDPGARSRLNALLFTGMFIGMASGAALGSLLLSQFGWAG 380 Query: 371 LTLLAAVAT 379 + +LA VA+ Sbjct: 381 VVVLATVAS 389 >gi|152982528|ref|YP_001352447.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 403 Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 96/368 (26%), Positives = 159/368 (43%), Gaps = 28/368 (7%) Query: 18 VLSVAAGSAIANNYAMQPALSLIAADFGVPVAPMTALASAAIIGYLLGLVLLVPLTDKLS 77 +L+++ G AN Y QP + LI+ D G+ + + + +GY+ GL+ +VPL D + Sbjct: 26 LLALSCGLIAANVYYAQPLIRLISVDLGLSLQAAGLIVTLTQLGYITGLIFVVPLADLIE 85 Query: 78 PRVLIPGQLFALACALLLAAWAASPE-VLIGCFVLIGATTTVAAQSSAVVGKYAHAQH-- 134 + L + AL+ AA A E L+ C L + TV HA H Sbjct: 86 TKRLTVSVMALSILALIGAALATKAEAFLLACMFLGLGSVTVPIL-------VPHAAHLV 138 Query: 135 ----RALSMATISAGISAGILLSRFVGGVLAQWWGWRGALLAFAAFAAVSALCVLPLLPT 190 R ++ + +G+ GI+L+R + ++A W + AA + A+ + LPT Sbjct: 139 PEAVRGRTVGNLMSGMMLGIMLARPISSLIADHSSWHTVFIVSAAVMTLLAISLHFALPT 198 Query: 191 QGPDAQSGYFSNLRSMPILMKTSRELRLRIYAGMLWFFAFNLIWVGLVVRLAAPPFNLDA 250 + P + Y L SM L + + LR R F AF L W + L P F+L Sbjct: 199 RKPQGKFSYGHLLGSMITLARQTPVLRRRAIYHFFQFAAFILFWTVTPLLLTGPVFHLSQ 258 Query: 251 AHIGLYSLAGLMGLLMTRVAGRLADRFGHRRVVVSGLTSAFFAAIGLALVLGHPAAIAVA 310 + L++LAG+ G + +AGR +DR R G+ A+ +A ++ H A Sbjct: 259 TGVALFALAGVAGAIAAPIAGRASDRGWTRPATALGML-----AVAIAFLITHIAEPGSP 313 Query: 311 LA---------VFDAGCFTAQVANQAGVVAIEPSRAGVLNSAYLFFYYVAGTIGAALAGV 361 LA + D G V Q + + G ++ Y+ +Y G +G+++ Sbjct: 314 LALGLLVTAAILLDFGATATLVLGQRVIFGLGGEIRGRVSGVYMIIWYFGGALGSSVGAW 373 Query: 362 IVGSAGWE 369 GWE Sbjct: 374 AYAHGGWE 381 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 706,147 Number of extensions: 24674 Number of successful extensions: 218 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 218 Number of HSP's successfully gapped: 6 Length of query: 401 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 316 Effective length of database: 906,776 Effective search space: 286541216 Effective search space used: 286541216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)