BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2268.p (299 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982492|ref|YP_001352911.1| LysR family transcriptional reg... 149 2e-37 gi|152980792|ref|YP_001354199.1| LysR family transcriptional reg... 134 5e-33 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 110 1e-25 gi|152979818|ref|YP_001353268.1| LysR family transcriptional reg... 84 9e-18 gi|152981635|ref|YP_001352439.1| MetE/MetH family transcriptiona... 84 2e-17 >gi|152982492|ref|YP_001352911.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 149 bits (376), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 95/295 (32%), Positives = 153/295 (51%), Gaps = 2/295 (0%) Query: 1 MKIDILGVQAFVAIADQGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALT 60 M I + ++AFV +A+ G F AA L V+Q++++L +R LE+ LG+ L +R TR + LT Sbjct: 1 MNITLRQLRAFVTVAETGKFTLAAELLGVSQSSLSLLVRDLENLLGLRLFDRHTRRLELT 60 Query: 61 AIGQDFLPQARRLLAELAEALVEIRETGIARRGDVSIACVPTVGVQYLPRIMQAYSARYP 120 G D LP A++ L +L + R+ ++G V+IA +P ++++++ RYP Sbjct: 61 DAGHDLLPVAQKTLMDLLSVVENSRDLLALKKGRVTIAAGSLHAATVIPDLLKSFNRRYP 120 Query: 121 HNRIKILDHASSAVAEAVLRREVEFGINIAREHHPELVSMALTEDRYVLICHKDHPLARR 180 R+ + D A V E ++ V+ GI + + +++ + D+Y ++ HK+H L R+ Sbjct: 121 GIRVIVEDVAERQVRELIVAGTVDVGIGMTLDGDNSMLAQVIGRDKYAVLMHKEHQLMRK 180 Query: 181 RRIAWMQLQSYPLIFAGEVSGNRALLDPALKANGFVLRSFYEVQRSSTAVGLVAQGVGVG 240 + I W + + I S R LD L G L YEV T G+V GVGV Sbjct: 181 KTITWQDIAATQPILLKPPSLIRTYLDQHLARVGITLTPAYEVALPWTMTGMVRAGVGVA 240 Query: 241 VAVVPKLAVQEGAYPNVRMIELVDPVVSRTLVLITRKAAHLSPAAQALYDMIREQ 295 + L V E +R I PV+ R L ++TR LSPAAQ+L + E+ Sbjct: 241 IVTTGVLPVAERMGLELRTIS--APVIERELAVLTRAGYPLSPAAQSLRTHLLEE 293 >gi|152980792|ref|YP_001354199.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 134 bits (338), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 89/294 (30%), Positives = 157/294 (53%), Gaps = 2/294 (0%) Query: 1 MKIDILGVQAFVAIADQGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALT 60 M + + ++AFVA+A+ F AA LH+TQ+A+++ +R+LE L + L +R TR + LT Sbjct: 1 MNLTLRQLRAFVAVAELSQFTLAAERLHITQSALSMLIRELEKELELKLFDRHTRMVRLT 60 Query: 61 AIGQDFLPQARRLLAELAEALVEIRETGIARRGDVSIACVPTVGVQYLPRIMQAYSARYP 120 G++FL ARR+L+EL A+++ RE+ +RG V++AC + V L M+ ++ R+P Sbjct: 61 EHGEEFLLTARRVLSELEVAVMQSRESVNYKRGRVAVACSTVLAVTLLTPFMREFAQRHP 120 Query: 121 HNRIKILDHASSAVAEAVLRREVEFGINIAREHHPELVSMALTEDRYVLICHKDHPLARR 180 ++ + D A ++ + +L +V+F + E+ + + D +VL+ K HPL ++ Sbjct: 121 GIKLMLRDVAEESIKKRLLNGDVDFSVGTQLNPESEISELPIFSDHFVLLMPKGHPLTKQ 180 Query: 181 RRIAWMQLQSYPLIFAGEVSGNRALLDPALKANGFVLRSFYEVQRSSTAVGLVAQGVGVG 240 RI + YP+I S RA+L+ LK L YE ST + +V G+G Sbjct: 181 TRIPLQAISQYPVIAMAPSSSIRAVLEAHLKRLDITLNIAYEASFPSTIIAMVRN--GMG 238 Query: 241 VAVVPKLAVQEGAYPNVRMIELVDPVVSRTLVLITRKAAHLSPAAQALYDMIRE 294 + ++P A Q + + + +RT+ + LSPAA+ + + E Sbjct: 239 ITILPANAHQLTSTQGIVVRNFGKSNFTRTVCTFQLRNRSLSPAAELFHTELLE 292 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 110 bits (275), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 138/297 (46%), Gaps = 29/297 (9%) Query: 11 FVAIADQGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALTAIGQDFLPQA 70 F+A A SF A+ +LH+TQ ++ +++++ED LG+ L +R R + LT G+ F A Sbjct: 9 FLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTAGELFQVYA 68 Query: 71 RRLLAELAEALVEIRETGIARRGDVSIACVPTVGVQYLPRIMQAYSARYPHNRIKILDHA 130 +R L E+ L + E + G V+ + + G +LP I+ ++ YP +I +L Sbjct: 69 KRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGIKITVLRLR 128 Query: 131 SSAVAEAVLRREVEFGINIAREHHPELVSMALTEDRYVLICHKDHPLARRRRIAWMQLQS 190 S + E +L ++ FG+ A ++ L L+ HPL I +L Sbjct: 129 SGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHHPLVGSAGITLNELNE 188 Query: 191 YPLIFAGEVSGNRALLDPALKANGFVLRSFYEVQRSSTAVGLVAQGVGVGVAVVPKLA-V 249 + L+ + +R ++D L ANG R E+ A+ P LA V Sbjct: 189 HELVMLSDEYNSRKMMDAILLANGITPRIVMEMN-----------------AIEPILATV 231 Query: 250 QEGAYPNVRMIELVD-----------PVVSRTLVLITRKAAHLSPAAQALYDMIREQ 295 + + + LVD P V+ T+ L TR+ +HLS AA+AL D IR++ Sbjct: 232 RHSSLATILSANLVDEMPGLHQVPLTPTVTHTVGLFTRRNSHLSAAARALVDTIRQR 288 >gi|152979818|ref|YP_001353268.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 84.3 bits (207), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 133/299 (44%), Gaps = 15/299 (5%) Query: 1 MKIDILGVQAFVAIADQGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALT 60 M D++ ++ VAIAD GS AA + + +A + RLR E G+TL +R+ + LT Sbjct: 1 MHFDLIDLRLLVAIADAGSLSKAAASFPIALSAASNRLRHFEQRSGLTLFQRSAEGMHLT 60 Query: 61 AIGQDFLPQARRLLAELAEALVEIRETGIARRGDVSIACVPTVGVQYLPRIMQAYSARYP 120 G+ L +AR +L E +R+ RR + +A +LP + + A YP Sbjct: 61 PAGRLVLDRARHVLLETENLKDTLRDLTGQRRITLRLAGTTVANSTFLPAALGPFLADYP 120 Query: 121 HNRIKILDHASSAVAEAVLRREVEFGINIAREHHPELVSMALTEDRYVLICHKDHPLARR 180 +++++H S+ V AV EVE G+ +++ + D+ VL+ H LA R Sbjct: 121 EIDLQLVEHKSADVLLAVQSGEVEVGVLDGNLATSDVIPLPFRHDKLVLLVPSGHALAER 180 Query: 181 RRIAWMQLQSYPLIFAGEVSGNRALLDPALKANGFVLR------SFYEVQRSSTAVGLVA 234 + + + + ++ N LR SFY + + LVA Sbjct: 181 PSVQLKDALGFAFVCLPPERAMQRFIEEMAVQNSRPLRVRVRAPSFYAIAQ------LVA 234 Query: 235 QGVGVGVAVVPK-LAVQEGAYPNVRMIELVDPVVSRTLVLITRKAAHLSPAAQALYDMI 292 + G+A++P+ A++ V M+ L D +R L + R LS A+ L D + Sbjct: 235 E--QAGIAMLPEAAALRHIRELPVHMVALEDAWATRELRICIRAWDTLSTHARQLVDYL 291 >gi|152981635|ref|YP_001352439.1| MetE/MetH family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 303 Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/284 (27%), Positives = 131/284 (46%), Gaps = 7/284 (2%) Query: 14 IADQGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALTAIGQDFLPQARRL 73 + QGS GAA LHVTQ+A++ ++KLE LG + R RS+ LT GQ L A R+ Sbjct: 13 VEKQGSLTGAANVLHVTQSALSHSMKKLEQQLGTEVWVREGRSLRLTQAGQYLLAVANRV 72 Query: 74 LAELAEALVEIRETGIARRGDVSIA--CVPTVGVQYLPRIMQAYSARYPHNRIKILDHAS 131 L +LA A +R+ RG + I C P Q+L +I+ Y + +P + + Sbjct: 73 LPQLALAEERLRQFSQGERGALRIGMECHPC--YQWLLKIVSPYLSAWPDVDVDVKQKFQ 130 Query: 132 SAVAEAVLRREVEFGINIAREHHPELVSMALTEDRYVLICHKDHPLARRRRIAWMQLQSY 191 A+ E++ + + P L + + VL+ +DH LA+ + + QL + Sbjct: 131 FGGIGALFAYEIDLLVTPDPLYKPGLKFEPVFDYEQVLVVARDHALAKVKYVKPEQLMNE 190 Query: 192 PLIFAGEVSGNRALLDPALKANGFVLRSFYEVQRSSTAVGLVAQGVGVGVAVVPKLAVQE 251 LI + + + L G + ++ + + +VA G GVA +P+ VQE Sbjct: 191 VLITYPVATDRLDVYNQFLLPAGVTPKRHKTIETTDIMLQMVAS--GRGVAALPRWLVQE 248 Query: 252 GAYP-NVRMIELVDPVVSRTLVLITRKAAHLSPAAQALYDMIRE 294 A +V + L +++ + L R+A + QA + RE Sbjct: 249 YAGKVDVVPVRLGPDGIAKQIFLGAREADLDTDYLQAFIALARE 292 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 548,653 Number of extensions: 18057 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 40 Length of query: 299 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 216 Effective length of database: 914,170 Effective search space: 197460720 Effective search space used: 197460720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)