BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2267.p
         (282 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983058|ref|YP_001352651.1| transposase [Janthinobacterium ...   135   3e-33

>gi|152983058|ref|YP_001352651.1| transposase [Janthinobacterium sp.
           Marseille]
          Length = 301

 Score =  135 bits (339), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 140/264 (53%), Gaps = 8/264 (3%)

Query: 11  YAARQRNPQLCCARSKRDAVLRVEISRVWHANMRVYGADKVWRQLNREGVSIARCTVERL 70
           Y A  +NP     R++ DA L   I   + A+  +YGA +V++ L   G   ++  V RL
Sbjct: 40  YYAWLKNP--LSDRAQEDARLLKLIRASFMASHGIYGAPRVFQDLRERGELCSKHRVARL 97

Query: 71  MRKQGLQGARRGKQLRTTRSDPKAACPLDRVNRQFKADRPNQLWVSDFTYVSTWQGWLYV 130
           MR+ GL+     +      S P    P + + RQF   RPN+ WV+D TY+ TWQGWLY+
Sbjct: 98  MRENGLRALHGYRIRHIPVSKPSPLIP-NLLQRQFTVTRPNEAWVTDITYIRTWQGWLYL 156

Query: 131 AFVIDVFARRIVGWRVSNSMTTDFVLDALEQALYARQPEGNGGLIHHSDRGSQYVGIRYS 190
           A V+D+F+R++VGW V  ++  + VLDA+ +A+ +R+P      + HSD+G+QY    + 
Sbjct: 157 AVVMDLFSRKVVGWAVRPTIHRELVLDAIAKAVRSRRPRHT---LIHSDQGTQYGSDAWR 213

Query: 191 ERLAEAGIAPSVGSRGDSYDNALAETINGLYKAELIHRRAPWKTRESVELATLEWV-AWF 249
                  + PS+  R + +DNA+ E+     K E + ++  +  RE+  L   E++  ++
Sbjct: 214 RFCKANHLEPSMSRRANCWDNAVVESFFSSLKKERV-KKHIYADRETATLDLAEYIDDFY 272

Query: 250 NHHRLLESIGYIPPAEAEANYYSR 273
           N  R    +G + P   E  +  R
Sbjct: 273 NGVRRHSHLGGVSPNTFETAHRRR 296


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 667,190
Number of extensions: 26867
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 200
Effective length of database: 917,867
Effective search space: 183573400
Effective search space used: 183573400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)