BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2255.p
         (501 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981200|ref|YP_001352527.1| TldD protein [Janthinobacterium...   509   e-145
gi|152980976|ref|YP_001352824.1| PmbA protein [Janthinobacterium...    62   6e-11

>gi|152981200|ref|YP_001352527.1| TldD protein [Janthinobacterium
           sp. Marseille]
          Length = 486

 Score =  509 bits (1310), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 266/482 (55%), Positives = 336/482 (69%), Gaps = 18/482 (3%)

Query: 29  ARWGLLTASGLDETQLLAGVSRALRKGGDYADLYLKSSIAESWHLERGKVARSNYNQSQG 88
           AR  LLT  GLDE+ L+  +        DYADLY + + +E W LE G V   +++  QG
Sbjct: 14  ARDVLLTPFGLDESILIKTLGTMFTHRVDYADLYFQFTKSEGWSLEEGIVKTGSFSIDQG 73

Query: 89  FGLRLVEGEQSVLTSADRFDATAIGKAA----DLAADAVGHVPVSPA-----GLVLRLPK 139
            G+R V G+++  + +D     A+ +AA     +A    G V V+ A     G  L LP 
Sbjct: 74  VGVRAVSGDKTAFSYSDEISERALLEAALATRTIARQGAGKVKVASAIQAGGGRSLYLPH 133

Query: 140 HGPTYYTLDDPLPSLDAAHKIALLESVDRACRARSPLVVEVMASLSISLDLVFLARNDGY 199
                    DPL SLDA  K+ LLE ++R  RA+ P VV+VMA L+   D+V + R+DG 
Sbjct: 134 ---------DPLTSLDATEKVKLLEKIERIARAKDPRVVQVMAGLAGEYDVVLVVRSDGV 184

Query: 200 CGGDVRPLVRLDVAVQVVRNGRREGASRTLGGRVGLATFDRTAIESVAALAVDAALIKLE 259
              D+RPLVR+ + V   +NGRRE  S   GGR   A FD   +E  A+ AV +AL+ LE
Sbjct: 185 LAADIRPLVRVSITVIAEQNGRREMGSSGGGGRYSYAYFDDELLEKYASEAVASALVNLE 244

Query: 260 ARAAPAGTMTVVIGPGWNGVMLHEAVGHGLEGDFNRRGSSAFAGRIGQRVAAPGVTIVDD 319
           AR APAG MTVV+GPGW GV+LHEA+GHGLEGDFNR+GSSAF+GRIG+RVAA GVT+VDD
Sbjct: 245 ARPAPAGPMTVVLGPGWPGVLLHEAIGHGLEGDFNRKGSSAFSGRIGERVAAKGVTVVDD 304

Query: 320 GTVPGSRGSLNIDDEGTPGQCTTLIEDGILVSYMQDSLNARLMGVANTGNGRRESYDVLP 379
           GT+   RGSLNIDDEG P QCTTLIEDGIL  Y+QD++NARLM +  TGN RRES+  LP
Sbjct: 305 GTIADRRGSLNIDDEGNPTQCTTLIEDGILKGYIQDTMNARLMKMPVTGNARRESFAHLP 364

Query: 380 MPRMTNTYMRAGGVDPAEIIASVKQGIYIAHLEGGQVDISSGRFMFAASEAFLIEDGRLS 439
           MPRMTNTYM  G  DPAEI+ASVK G+Y  +  GGQVDI++G+F+F+ASEA++IEDG+++
Sbjct: 365 MPRMTNTYMLGGDKDPAEILASVKNGLYAVNFGGGQVDITNGKFVFSASEAYMIEDGKVT 424

Query: 440 APVKGATVLGNGPQSLKNVKLIGNDLEINTASGVCGKAGQSVPVGVGQPTLRIDGMTVGG 499
            PVKGAT++GNGP  L  V +IGND+ +++  GVCGK GQSVPVGVGQPTLRIDG+TVGG
Sbjct: 425 YPVKGATLIGNGPDVLNRVSMIGNDMRLDSGVGVCGKEGQSVPVGVGQPTLRIDGVTVGG 484

Query: 500 TA 501
           TA
Sbjct: 485 TA 486


>gi|152980976|ref|YP_001352824.1| PmbA protein [Janthinobacterium
           sp. Marseille]
          Length = 454

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 16/225 (7%)

Query: 244 ESVAALAVDAALIKLEARAAPAGTMTVV----IGPGWNGVMLHEAVGHGLEGDFNRRGSS 299
           E+V   A   AL +L AR        V+    +  G  G  +    G  L      R S+
Sbjct: 220 EAVGQYAAQRALARLNARKIDTRKCPVLFEAPLAAGLLGAFVQAVSGGAL-----YRKST 274

Query: 300 AFAGRIGQRVAAPGVTIVDDGTVPGSRGSLNIDDEGTPGQCTTLIEDGILVSYMQDSLNA 359
                +G+   AP V IV+D  V G  GS   D+EG       +++DGI+  Y   + +A
Sbjct: 275 FLLDSLGKPAFAPHVQIVEDPHVIGGVGSSPFDEEGVKTSRRDVVKDGIVQGYFLSTYSA 334

Query: 360 RLMGVANTGNGRRESYDVLPMPRMTNTYMRAGGVDPAEIIASVKQGIYIAHLEGGQVDIS 419
           R +G+  TGN    S+++     MT++  ++   D   ++  +  G+ +  L G  V+  
Sbjct: 335 RKLGMQTTGNA-GGSHNL----SMTSSLTKSTD-DFKAMLKKLDTGLLVTELMGQGVNYV 388

Query: 420 SGRFMFAASEAFLIEDGRLSAPVKGATVLGNGPQSLKNVKLIGND 464
           +G +   AS  F +E G +  PV+  T+ GN       V  IG D
Sbjct: 389 TGDYSRGAS-GFWVEKGVIQYPVEEITIAGNMKDIFMQVVAIGAD 432


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,225,474
Number of extensions: 54499
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 2
Length of query: 501
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 414
Effective length of database: 899,382
Effective search space: 372344148
Effective search space used: 372344148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)