BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2253.p (594 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981011|ref|YP_001351961.1| ABC-type transport system, perm... 386 e-108 gi|152981278|ref|YP_001351967.1| ABC-type transport system invol... 85 1e-17 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 76 6e-15 gi|152980335|ref|YP_001353519.1| ABC transporter membrane-spanni... 75 8e-15 gi|152982247|ref|YP_001353080.1| ABC transporter, ATP-binding/pe... 73 4e-14 >gi|152981011|ref|YP_001351961.1| ABC-type transport system, permease and ATPase components [Janthinobacterium sp. Marseille] Length = 587 Score = 386 bits (991), Expect = e-108, Method: Compositional matrix adjust. Identities = 213/558 (38%), Positives = 309/558 (55%), Gaps = 4/558 (0%) Query: 17 SQRAHFRTSIWWLFKSYWTSREAPVSALLAAFIVGSGFVGVYFSLRVNQWTGKFYDAIGS 76 QR +R ++W L K YW S E + L IV VY + N W +FY+A+ + Sbjct: 3 KQRIDWR-AVWQLIKPYWVSEEKWKARGLLFVIVALALAAVYLEVLFNTWNREFYNALET 61 Query: 77 GRFGTIPALLTLFLGLIMVTATLTISASVAADVLKLRWRTWLTTTLIDQWTRSGAYFRIE 136 F L F L + I L++RWR W+T + +W + AY+RIE Sbjct: 62 KNFKAFTEQLWRFTYLAFTFIAVAIYRIYLTQSLQMRWRMWMTQQYMARWLQHQAYYRIE 121 Query: 137 RDKLLDNADQRISEDVKLFVDYTVTITSHLLHVPVSAVTFSIVLWELSGSYLLELGHLAI 196 + DN DQRI+ED+ L T++++ LL V+ V+F +LW +SG L I Sbjct: 122 QTGTADNPDQRIAEDLNLLTSATLSLSLGLLSSVVTLVSFVGILWSVSGPISFMLSSHEI 181 Query: 197 TIPAYMLFAVYLYSGTTLLLTHLLGRSLIPINIRQQKVEADFRALMVQIREGAEQIAFYD 256 TIP YM++ Y+G L+ +G L+ N +Q+ EADFR ++++RE AE +A Y Sbjct: 182 TIPGYMVWFAIAYAGVGSLIVGWVGWPLVSKNYFRQRFEADFRFGLIRVRENAEAVALYR 241 Query: 257 GANVEASRLRSTFANIRANTWRIIRVAAQVMFGVQVPGQISSILPALLVLPQLMAGTMTL 316 G EA +L F IR N W I+R + Q ++I P L+ P+ AG +TL Sbjct: 242 GETEEAVQLNGRFQRIRDNWWGIMRTTKSLNLVSTFYSQFANIFPFLMAAPRYFAGAITL 301 Query: 317 GGMMRVSAAFGSVSSTLAYFPQAYQTFAAWRAVVRRLLALLDATEIKSPTFELTVLQRPQ 376 GG+M++S+AFG V L++F A+ A W+A V RL A + E V+ Sbjct: 302 GGLMQISSAFGQVQGALSWFISAFSDLAEWKASVNRLAGFHAAVDAAHDEKEGVVVTLNN 361 Query: 377 QTTIEVGALTLTDPHGNPLSRIPAFAVKRGARCLIRGRSGSGKSTLLRALAGIWPFGVGS 436 I + + L P+G L+ ++ G R LI G SG GKSTL+RALAG+WP+G GS Sbjct: 362 VGAILIDRVVLNVPNGVALTSELTADIQAGQRILIAGPSGCGKSTLIRALAGVWPYGAGS 421 Query: 437 IAVPTRTSMMFVPQKSYVPVGSLRQALAYPGAEADVSDALAQDILTAVGLAQFLPVLDQP 496 I +P + ++F+PQ+SY+P+G+LR A+AYP E +D + L L Q +LD Sbjct: 422 IEIPQQWKLLFLPQRSYLPIGTLRAAIAYPAGENSYTDLAIRHYLDLCKLPQLKKMLDHS 481 Query: 497 DRWGGRLSGGEQQRLAFARILIARPEHIFIDEATSALDDESEQRMYSLLLERLPHSTLIS 556 D W RLS GEQQRLAF R L+ RP+ +F+DEA+SALD E+E+ +Y L+L+ LP + ++S Sbjct: 482 DNWSQRLSPGEQQRLAFVRALLTRPDALFLDEASSALDTETEELVYQLILQELPEAVIVS 541 Query: 557 VAHRKEVAAFHD---QFV 571 VAHR+ VA +H QFV Sbjct: 542 VAHRESVAKYHKMRWQFV 559 >gi|152981278|ref|YP_001351967.1| ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Janthinobacterium sp. Marseille] Length = 630 Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 96/339 (28%), Positives = 152/339 (44%), Gaps = 43/339 (12%) Query: 250 EQIAFYDGANVEASRLRSTFANIRANTWRIIRVAAQVMFGVQVPGQISSILPALLVL--- 306 E + ++ + EA R + V +Q + GQ S I A+ ++ Sbjct: 231 ETVKYFGNEDYEARRYDEGLKR-----YETAAVKSQTSLSLLNTGQSSIIAIAVTLILWR 285 Query: 307 --PQLMAGTMTLGGMMRVSAAFGSVSSTLAYFPQAYQTFAAWRAVVRRLLALLDAT-EI- 362 +++GTMTLG ++ V+A + L + Y+ A + RL +LLD EI Sbjct: 286 ATQGVISGTMTLGDLVLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFSLLDQNREIA 345 Query: 363 KSPTFELTVLQRPQQTTIEVGALTLTDPHGNPLSRIPAFAVKRGARCLIRGRSGSGKSTL 422 P + V + + + + + F + G + G SGSGKSTL Sbjct: 346 DKPDTQALVTDGAE---VRFSHVDFSYEANRQILFDVDFTIAAGTTTAVVGHSGSGKSTL 402 Query: 423 LRALAGIWPFGVGSIAVP-------TRTSMM----FVPQKSYVPVGSLRQALAY--PGA- 468 R L + G+I + T+TS+ VPQ + + ++ +AY PGA Sbjct: 403 SRLLFRFYDVNQGAILIDGQDVRDVTQTSLRQAIGIVPQDTVLFNDTIAYNIAYGKPGAS 462 Query: 469 EADVSDALAQDILTAVGLAQFLPVLDQPDRW-------GGRLSGGEQQRLAFARILIARP 521 AD+ A AQ + + +F+ L PD + G +LSGGE+QR+A AR L+ P Sbjct: 463 HADIV-AAAQ----SAYIHEFIESL--PDGYNTMVGERGLKLSGGEKQRVAIARTLLKHP 515 Query: 522 EHIFIDEATSALDDESEQRMYSLLLERLPHSTLISVAHR 560 + DEATSALD +SEQ + + L E + T + +AHR Sbjct: 516 AILIFDEATSALDSKSEQAIQAQLKEIAQNRTTLIIAHR 554 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 19/199 (9%) Query: 400 AFAVKRGARCL-IRGRSGSGKSTLLRALAGIWPFGVGSIAVPTRTSMMFVPQK------S 452 + +V++G +CL + GR+G GK+TLL+ L G+ P G++++ R P + + Sbjct: 21 SLSVEKG-KCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSLDGRDITKLKPHQRAALGIA 79 Query: 453 YVPVGSLRQALAYPGAEADVSDALA-----QDILTAVGLAQFLPVLDQP-DRWGGRLSGG 506 YVP G R+ A E ++ +A + + + + PVL + R GG LSGG Sbjct: 80 YVPQG--REIFARLTVEENLLMGMATKSGKKASVIKGEVYELFPVLKEMLHRRGGDLSGG 137 Query: 507 EQQRLAFARILIARPEHIFIDEATSALDD---ESEQRMYSLLLERLPHSTLISVAHRKEV 563 +QQ+LA AR L+A P+ I +DE T + + R+ SLL ER L+ + Sbjct: 138 QQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLRERGDIGILLCEQYFDFA 197 Query: 564 AAFHDQFVDLTPDAVAASA 582 D FV L+ V AS Sbjct: 198 RELADTFVVLSRGEVVASG 216 >gi|152980335|ref|YP_001353519.1| ABC transporter membrane-spanning ATP-binding protein [Janthinobacterium sp. Marseille] Length = 610 Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 113/219 (51%), Gaps = 35/219 (15%) Query: 372 LQRPQQTTIEVGAL--------TLTDPHGN-PLSRIPAFAVKRGARCLIRGRSGSGKSTL 422 ++R ++ I++G++ + + H + P + +F+ G G SGSGKSTL Sbjct: 321 VERGSKSAIDIGSIRDVRFEDVSFSHKHASEPALQHVSFSAGLGDTIAFVGPSGSGKSTL 380 Query: 423 LRALAGIWPFGVGSI---AVPTRT--------SMMFVPQKSYVPVGSLRQALAYPGAEAD 471 ++ L G++ G++ V TR + FV Q++++ G++R+ L + Sbjct: 381 VKLLVGLYTPASGAVYYNDVSTRDLRYNRARRQIGFVTQETHLFAGTIRENLQFVKP--- 437 Query: 472 VSDALAQDILTAVGLAQFLPVLDQ-PD-------RWGGRLSGGEQQRLAFARILIARPEH 523 DA ++I+ A+ A +L+Q P+ G +LSGGE+QRL+ AR LI +P Sbjct: 438 --DATDEEIIAAMEQASCAYLLEQSPEGLDTMIGEMGVKLSGGEKQRLSIARALIRQPRL 495 Query: 524 IFIDEATSALDDESEQRMYSLLLERLPHSTLIS--VAHR 560 + DEATSALD +E+++ + ST I+ +AHR Sbjct: 496 LIFDEATSALDSLTEEQITDTVRMISARSTQITILIAHR 534 >gi|152982247|ref|YP_001353080.1| ABC transporter, ATP-binding/permease fusion protein, type I secretion pathway [Janthinobacterium sp. Marseille] Length = 585 Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 125/291 (42%), Gaps = 25/291 (8%) Query: 311 AGTMTLGGMMRVSAAFGSVSSTLAYFPQAYQTFAAWRAVVRRLLALLDATEIKSPTFELT 370 A +T+G ++ S G +S L+ A++ L I++P ++T Sbjct: 296 ANALTVGALIASSMLVGRAASMLSSVAMVLGRIDAFKQARTSFEELF----IEAPNAQVT 351 Query: 371 VLQRPQQT--TIEVGALTLT-DPHGNPLSRIPAFAVKRGARCLIRGRSGSGKSTLLRALA 427 QQ I+V L+ + P + + +F + G + + GRSGSGKSTLLR LA Sbjct: 352 NEVDRQQIDGKIQVANLSFSIKPDEPAMLKQISFVINPGEKIGLVGRSGSGKSTLLRCLA 411 Query: 428 GIWPFGVGSI--------AVPTRT---SMMFVPQKSYVPVGSLRQALAYPGAEADVSDAL 476 G+ G + A P S+ + PQ ++ G+L + A +S ++ Sbjct: 412 GVHAPDTGQVLMDGIAVAAYPQEVRMRSIAYKPQDPFLFDGTLASNIFVDNA---ISTSI 468 Query: 477 AQDILTAVGLAQFLP----VLDQPDRWGGRLSGGEQQRLAFARILIARPEHIFIDEATSA 532 Q L + + L LDQ G LSGG++Q +A AR + P + +DE T+ Sbjct: 469 YQTALHVSCMDELLAGGQLRLDQLLVAPGNLSGGQRQMVALARAIACTPNVLLLDEPTTG 528 Query: 533 LDDESEQRMYSLLLERLPHSTLISVAHRKEVAAFHDQFVDLTPDAVAASAP 583 +D +E ++ L+ TL+ H + D+ + + + A P Sbjct: 529 IDQGTENKIIERLVAFAATRTLVVATHSPVLLKQMDRIIVIHDGKIVADGP 579 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,218,246 Number of extensions: 47030 Number of successful extensions: 324 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 309 Number of HSP's successfully gapped: 28 Length of query: 594 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 505 Effective length of database: 891,988 Effective search space: 450453940 Effective search space used: 450453940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)